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AT4G24290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MAC/Perforin domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MAC/Perforin domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin (MACPF) domain (InterPro:IPR020864), Membrane attack complex component/perforin (MACPF) domain, metazoa (InterPro:IPR020865); BEST Arabidopsis thaliana protein match is: MAC/Perforin domain-containing protein (TAIR:AT1G28380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT4G24290EnsemblPlants:AT4G24290.1entrez:828532hmmpanther:PTHR33199hmmpanther:PTHR33199:SF1Pfam:PF01823Pfscan:PS51412
TMHMM:TMhelix
Coordinates (TAIR10) chr4:+:12594856..12596590
Molecular Weight (calculated) 39335.60 Da
IEP (calculated) 8.64
GRAVY (calculated) -0.14
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MALRLPASKA AEVAIGSIGC GYDLAIDLRL KYCKGGSKDS RLLDIKEGDD NCEIVLPGGI SIPNVSKSIK CDKGERMRFR SDILPFQQMA EQFNQELSLA
101: GKIPSGLFNA MFEFSSCWQK DAAYTKNLAF DGVFISLYSV ALDKSQVLLR EHVKQAVPST WDPAALARFI DIYGTHIIVS VKMGGKDVIY AKQQHSSKLQ
201: PEDLQKRLKE VADKRFVEAS VVHNTGSERV QASSKVETKE QRLRFADTSS LGSYANKEDY VFMCKRRGGN DNRNLMHNEW LQTVQMEPDV ISMSFIPITS
301: LLNGVPGSGF LSHAINLYLR CKPINHLRFV HFFLELFFIL VVSFTFRLEV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)