suba logo
AT4G24270.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : EMBRYO DEFECTIVE 140
Curator
Summary (TAIR10)
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 140 (EMB140); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lsm interaction (InterPro:IPR008669), RNA-processing protein, HAT helix (InterPro:IPR003107), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 6865 Blast hits to 6296 proteins in 569 species: Archae - 0; Bacteria - 876; Metazoa - 2538; Fungi - 1681; Plants - 1001; Viruses - 0; Other Eukaryotes - 769 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IUN4eggNOG:ENOG410ZXWMEMBL:CP002687EnsemblPlants:AT4G24270EnsemblPlants:AT4G24270.1entrez:828529ExpressionAtlas:F4JQ74
Gene3D:1.25.40.10Gene3D:3.30.70.330GeneID:828529GO:GO:0000166GO:GO:0003676GO:GO:0006396Gramene:AT4G24270.1
hmmpanther:PTHR24012hmmpanther:PTHR24012:SF358InterPro:IPR000504InterPro:IPR003107InterPro:IPR008669InterPro:IPR011990InterPro:IPR012677
iPTMnet:F4JQ74ncoils:CoilPaxDb:F4JQ74Pfam:PF00076Pfam:PF05391Pfam:PF14259Pfscan:PS50102
PhylomeDB:F4JQ74PRIDE:F4JQ74PROSITE:PS50102ProteinModelPortal:F4JQ74Proteomes:UP000006548RefSeq:NP_849551.1SMART:SM00360
SMART:SM00386SMR:F4JQ74STRING:3702.AT4G24270.2SUPFAM:SSF48452SUPFAM:SSF54928TAIR:AT4G24270tair10-symbols:EMB140
UniGene:At.32361UniProt:F4JQ74
Coordinates (TAIR10) chr4:-:12581765..12587293
Molecular Weight (calculated) 92776.80 Da
IEP (calculated) 5.48
GRAVY (calculated) -0.72
Length 816 amino acids
Sequence (TAIR10)
(BLAST)
001: MMADDTELVS NTDQKMEDAS AENPARADPP SSDDSGDSDS DSEDEAESNQ QIVTLESELS ANPYNYDAYV QYIKLLRKTA NLEKLRQARE AMSAIFPLSP
101: SLWLEWARDE ASLAASENVP EIVMLYERGL SDYQSVSLWC DYLSFMLEFD PSVRGYPSEG ISKMRSLFER AIPAAGFHVT EGNRIWEGYR EFEQGVLATI
201: DEADIEERNK QIQRIRSIFH RHLSVPLENL SSTLIAYKTW ELEQGIDLDI GSDDLSKVSH QVAVANKKAQ QMYSERAHLE ENISKQDLSD TEKFQEFMNY
301: IKFEKTSGDP TRVQAIYERA VAEYPVSSDL WIDYTVYLDK TLKVGKAITH AYSRATRSCP WTGDLWARYL LALERGSASE KEIYDVFEKS LQCTFSSFEE
401: YLDLYLTRVD GLRRRMLSTR MLEALDYSLI RETFQQASDY LTPHMQNTDS LLHLHTYWAN LELNIGKDLA GARGVWDSFL KKSGGMLAAW HAYIDMEVHL
501: GHIKEARSIY RRCYTRKFDG TGSEDICKGW LRFEREHGDL EHFDLAVQKV MPRLEELQLM RLQQESTPVK PSAGLKEHSS QKRKAEQNVE EESLAKRQKR
601: KSQKEVDLGG QSATVPATKN VKAENGKTAD SDKEETEDAK PLKPKVYRDE CTAFISNLSV KAQEEDIRKF FGDDGGVDSI RILHHKDTGK PRGLAYADFV
701: DDEHLAAAIA KNRKMFFGKK ISIARSNPKK GKKEFTRRGN DGSGNSKDPS LISEKAKAPL GGETEGERKG NEVEVRGKNT FAVPRNVKPL GYTTPKPSAD
801: ETPKSNDEFR NMFLKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)