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AT4G24240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WRKY DNA-binding protein 7
Curator
Summary (TAIR10)
Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family.
Computational
Description (TAIR10)
WRKY DNA-binding protein 7 (WRKY7); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY, Zn-cluster (InterPro:IPR018872); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 11 (TAIR:AT4G31550.1); Has 3521 Blast hits to 3002 proteins in 204 species: Archae - 0; Bacteria - 2; Metazoa - 39; Fungi - 4; Plants - 3353; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
Protein Annotations
BioGrid:13814eggNOG:ENOG410IVR7eggNOG:ENOG410YD1EEMBL:AF272746EMBL:AL078637EMBL:AL161561EMBL:AY072151
EMBL:AY084583EMBL:AY096490EMBL:CP002687EnsemblPlants:AT4G24240EnsemblPlants:AT4G24240.1entrez:828525Gene3D:2.20.25.80
GeneID:828525Genevisible:Q9STX0GO:GO:0003700GO:GO:0005516GO:GO:0005634GO:GO:0006351GO:GO:0043565
Gramene:AT4G24240.1hmmpanther:PTHR31282hmmpanther:PTHR31282:SF27HOGENOM:HOG000029200InParanoid:Q9STX0IntAct:Q9STX0InterPro:IPR003657
InterPro:IPR018872KEGG:ath:AT4G24240MINT:MINT-1338821OMA:KCSSMDDPaxDb:Q9STX0Pfam:PF03106Pfam:PF10533
Pfam:Q9STX0Pfscan:PS50811PhylomeDB:Q9STX0PIR:T09887PRIDE:Q9STX0PRO:PR:Q9STX0PROSITE:PS50811
ProteinModelPortal:Q9STX0Proteomes:UP000006548RefSeq:NP_194155.1SMART:SM00774SMR:Q9STX0STRING:3702.AT4G24240.1SUPFAM:0050605
SUPFAM:SSF118290TAIR:AT4G24240tair10-symbols:ATWRKY7tair10-symbols:WRKY7UniGene:At.20946UniProt:Q9STX0
Coordinates (TAIR10) chr4:+:12571930..12573446
Molecular Weight (calculated) 38351.30 Da
IEP (calculated) 10.15
GRAVY (calculated) -0.68
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVELMMSSY SGGGGGGDGF PAIAAAAKME DTALREAASA GIHGVEEFLK LIGQSQQPTE KSQTEITAVT DVAVNSFKKV ISLLGRSRTG HARFRRAPAS
101: TQTPFKQTPV VEEEVEVEEK KPETSSVLTK QKTEQYHGGG SAFRVYCPTP IHRRPPLSHN NNNNQNQTKN GSSSSSPPML ANGAPSTINF APSPPVSATN
201: SFMSSHRCDT DSTHMSSGFE FTNPSQLSGS RGKPPLSSAS LKRRCNSSPS SRCHCSKKRK SRVKRVIRVP AVSSKMADIP SDEFSWRKYG QKPIKGSPHP
301: RGYYKCSSVR GCPARKHVER ALDDAMMLIV TYEGDHNHAL VLETTTMNHD KTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)