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AT4G24210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.698
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
F-box protein that is involved in GA signaling. Regulates seed germination. Component of E3 ubiquitin complex. Interacts with DELLA proteins.
Computational
Description (TAIR10)
SLEEPY1 (SLY1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G48170.1); Has 122 Blast hits to 122 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 9; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:13811DNASU:828522eggNOG:ENOG410IZJTeggNOG:ENOG410YPR2EMBL:AL078637EMBL:AL161561EMBL:AY087672
EMBL:BT004192EMBL:BT005395EMBL:CP002687EnsemblPlants:AT4G24210EnsemblPlants:AT4G24210.1entrez:828522GeneID:828522
Genevisible:Q9STX3GO:GO:0005634GO:GO:0009740GO:GO:0009845GO:GO:0010162GO:GO:0016567GO:GO:0019005
Gramene:AT4G24210.1hmmpanther:PTHR12874hmmpanther:PTHR12874:SF10HOGENOM:HOG000090428InParanoid:Q9STX3IntAct:Q9STX3InterPro:IPR001810
KEGG:ath:AT4G24210KO:K14495OMA:HSLYLWPPaxDb:Q9STX3Pfam:PF00646Pfam:Q9STX3PhylomeDB:Q9STX3
PIR:T09884PRIDE:Q9STX3PRO:PR:Q9STX3ProteinModelPortal:Q9STX3Proteomes:UP000006548RefSeq:NP_194152.1STRING:3702.AT4G24210.1
SUPFAM:SSF81383TAIR:AT4G24210tair10-symbols:SLY1UniGene:At.43332UniPathway:UPA00143UniProt:Q9STX3
Coordinates (TAIR10) chr4:+:12563658..12564113
Molecular Weight (calculated) 17456.00 Da
IEP (calculated) 9.48
GRAVY (calculated) -0.61
Length 151 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRSTTDSDL AGDAHNETNK KMKSTEEEEI GFSNLDENLV YEVLKHVDAK TLAMSSCVSK IWHKTAQDER LWELICTRHW TNIGCGQNQL RSVVLALGGF
101: RRLHSLYLWP LSKPNPRARF GKDELKLTLS LLSIRYYEKM SFTKRPLPES K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)