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AT4G24200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcription elongation factor (TFIIS) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcription elongation factor (TFIIS) family protein; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923); Has 1174 Blast hits to 562 proteins in 174 species: Archae - 0; Bacteria - 342; Metazoa - 163; Fungi - 176; Plants - 109; Viruses - 0; Other Eukaryotes - 384 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKEKeggNOG:ENOG410YARQEMBL:AY064014EMBL:AY096636
EMBL:CP002687EnsemblPlants:AT4G24200EnsemblPlants:AT4G24200.1entrez:828521
Gene3D:1.20.930.10GeneID:828521GO:GO:0003677GO:GO:0003746
GO:GO:0005634GO:GO:0005739GO:GO:0006351Gramene:AT4G24200.1
hmmpanther:PTHR15141hmmpanther:PTHR15141:SF48InterPro:IPR017923KEGG:ath:AT4G24200
OMA:NDNCDIVPfam:PF08711Pfscan:PS51319PROSITE:PS51319
Proteomes:UP000006548RefSeq:NP_194151.2STRING:3702.AT4G24200.1SUPFAM:SSF47676
TAIR:AT4G24200UniGene:At.22816UniProt:Q8VZM2
Coordinates (TAIR10) chr4:-:12556927..12559929
Molecular Weight (calculated) 107589.00 Da
IEP (calculated) 4.61
GRAVY (calculated) -0.59
Length 1000 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLEDFFTLT EIKDGLTVTS RVEELVSVMQ SNKDSVLKNS GDAFRQWTAV ASTIAATKNR DCLDVFVNLD GLVYLSSWLA EAQMLDNDSV DRSVEESILA
101: LLEAVENLGV DSSKLVSSGL WVAVKKLVDH GSSRVQDQAR KLFGSWKDKD DYDHSEHDSE SCNKIHEDEM RVVAASIESS GQKSAVTLCS MQSTSEKHCP
201: EIADEALLSG CSEGNIPDQD KGLGLQNDKA GFVSNVNSHC SNSMTETFNG SCTDDIMKEV QEKLSVKEKS SMGETSGPTT FGTMPTGSSS LLYLERDSAE
301: GPSNAPLDAE IPKEKQMANY FLEKLGEAGT SSAAGHVAVS SDSIVASMEL EKNSLLQSSL DSNEVSKNVS GTICGSHDVS VAHNSKQVSS LTHMTDNQDS
401: DNSSRLSGGL GRSRKFESDN LTGLADNEGK DDMGHSDKKR RVKRRKKRIS SRSMTISQRL GAIDKTTTDI DLGILDALEV ATKVAQEVAR EVDSGEPSHS
501: SSEELSDESG QSGSQYSRDD DVHTGSPSKG LSVTENHSFE EPHVGDDDLM DEKDDKPESG DVEERHLATA AKSEVGREKS PCGFDLNQDI CPDETDVIMS
601: STSTTPAPMS VSFSVSSSAM PAAAPWHLER SLSGKGSAAT SVFHSALPHK VPSGDLREKQ VISRGIDLNV AEVGDDQVED LTPWKQFPFS SSNSRGGESS
701: HEASLRGSSK FNLDLNCMNE DDEMPPPSES KMETRLFLSH NGQQSASPVS SSSVAQQSGK EVNFDLNDRP QFFIDSRDQG PYYGRHPWST ASYGGHKLEE
801: PGISILGTKV EADRKDSVPQ MASFLSNGKS LEPATGLHMG RTGNSLGLAP GVSFSPAPMY GYNGLTGPPG LSMSSPMYVP GTAIPYMVDS RGTPVMMPQI
901: IGSAPYVQPP FPQQHMFMSL AGGSPSTNGS MRPNFDQNSG FGLEIGNRES LNLRQFLSPS QSGAMGEHSG ANVEPSSSSS ISIGGKRKEP EPRWEFPPWR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)