suba logo
AT4G24160.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
peroxisome 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23667126 (2013): cytosol None
  • PMID:23667126 (2013): peroxisome peroxisomal membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Encodes a soluble lysophosphatidic acid acyltransferase with additional triacylglycerol lipase and phosphatidylcholine hydrolyzing enzymatic activities. Plays a pivotal role in maintaining the lipid homeostasis by regulating both phospholipid and neutral lipid levels.
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G64670.1); Has 13697 Blast hits to 13658 proteins in 1951 species: Archae - 114; Bacteria - 10198; Metazoa - 427; Fungi - 417; Plants - 428; Viruses - 0; Other Eukaryotes - 2113 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G24160-MONOMERBRENDA:2.3.1.51EC:2.3.1.51eggNOG:COG0596eggNOG:KOG4409EMBL:AC002343EMBL:AK117965
EMBL:AL109619EMBL:AL161561EMBL:BT029749EMBL:CP002687EnsemblPlants:AT4G24160EnsemblPlants:AT4G24160.1entrez:828516
ESTHER:arath-LPAATExpressionAtlas:O22975Gene3D:3.40.50.1820GeneID:828516Genevisible:O22975GO:GO:0003841GO:GO:0004623
GO:GO:0005737GO:GO:0008654GO:GO:0016298GO:GO:0042171GO:GO:0055088GO:GO:0055089GO:GO:0055091
GO:GO:0070328gramene_pathway:2.3.1.51gramene_pathway:PWY-5667gramene_pathway:PWY0-1319gramene_pathway:TRIGLSYN-PWYhmmpanther:PTHR10992hmmpanther:PTHR10992:SF866
HOGENOM:HOG000243247InParanoid:O22975InterPro:IPR000073InterPro:IPR029058iPTMnet:O22975KEGG:ath:AT4G24160MEROPS:S33.009
OMA:PMIHRIKPaxDb:O22975Pfam:O22975Pfam:PF00561PhylomeDB:O22975PIR:T13464PRIDE:O22975
PRINTS:PR00111PRO:PR:O22975ProteinModelPortal:O22975Proteomes:UP000006548Reactome:R-ATH-1483152RefSeq:NP_194147.2SMR:O22975
STRING:3702.AT4G24160.1SUPFAM:SSF53474TAIR:AT4G24160UniGene:At.20387UniProt:O22975
Coordinates (TAIR10) chr4:+:12539871..12542210
Molecular Weight (calculated) 46528.30 Da
IEP (calculated) 9.69
GRAVY (calculated) -0.20
Length 418 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLSRFASRL RMAEEISKTK VGSSSTASVA DSSAAASAAT NAAKSRWKIL WPNSLRWIPT STDYIIAAEK RLLSILKTPY VQEQVSIGSG PPGSKIRWFR
101: STSNESRYIN TVTFDAKEGA PTLVMVHGYG ASQGFFFRNF DALASRFRVI AIDQLGWGGS SRPDFTCRST EETEAWFIDS FEEWRKAQNL SNFILLGHSF
201: GGYVAAKYAL KHPEHVQHLI LVGSAGFSAE ADAKSEWLTK FRATWKGAVL NHLWESNFTP QKLVRGLGPW GPGLVNRYTT ARFGAHSEGT GLTEEEAKLL
301: TDYVYHTLAA KASGELCLKY IFSFGAFARK PLLQSASEWK VPTTFIYGMN DWMNYQGAVE ARKSMKVPCE IIRVPQGGHF VFIDNPIGFH SAVLYACRKF
401: ISQDSSHDQQ LLDGLRLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)