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AT4G24150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : growth-regulating factor 8
Curator
Summary (TAIR10)
Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.
Computational
Description (TAIR10)
growth-regulating factor 8 (GRF8); FUNCTIONS IN: transcription activator activity; INVOLVED IN: leaf development; LOCATED IN: nucleus, chloroplast envelope; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: growth-regulating factor 7 (TAIR:AT5G53660.1); Has 485 Blast hits to 474 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 485; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:13804eggNOG:ENOG410J1QEeggNOG:ENOG41113EAEMBL:AC002343EMBL:AL109619EMBL:CP002687EnsemblPlants:AT4G24150
EnsemblPlants:AT4G24150.1entrez:828515GeneID:828515Genevisible:Q9SU44GO:GO:0005524GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009941GO:GO:0048366Gramene:AT4G24150.1hmmpanther:PTHR31602hmmpanther:PTHR31602:SF15HOGENOM:HOG000153539
InParanoid:Q9SU44InterPro:IPR014977InterPro:IPR014978InterPro:IPR031137KEGG:ath:AT4G24150OMA:EDFVGGFPANTHER:PTHR31602
PaxDb:Q9SU44Pfam:PF08879Pfam:PF08880Pfam:Q9SU44Pfscan:PS51666Pfscan:PS51667PhylomeDB:Q9SU44
PIR:T13463PRIDE:Q9SU44PRO:PR:Q9SU44PROSITE:PS51666PROSITE:PS51667ProteinModelPortal:Q9SU44Proteomes:UP000006548
RefSeq:NP_194146.1SMART:SM00951STRING:3702.AT4G24150.1TAIR:AT4G24150tair10-symbols:AtGRF8tair10-symbols:GRF8UniGene:At.51240
UniGene:At.69386UniProt:Q9SU44
Coordinates (TAIR10) chr4:+:12535972..12539387
Molecular Weight (calculated) 54611.60 Da
IEP (calculated) 6.93
GRAVY (calculated) -0.63
Length 493 amino acids
Sequence (TAIR10)
(BLAST)
001: MRMLLGIPYV DKSVLSNSVL ERGKQDKSKL LLVDKCHYEL DVEERKEDFV GGFGFGVVEN SHKDVMVLPH HHYYPSYSSP SSSSLCYCSA GVSDPMFSVS
101: SNQAYTSSHS GMFTPAGSGS AAVTVADPFF SLSSSGEMRR SMNEDAGAAF SEAQWHELER QRNIYKYMMA SVPVPPELLT PFPKNHQSNT NPDVDTYRSG
201: MFSIYADYKN LPLSMWMTVT VAVATGGSLQ LGIASSASNN TADLEPWRCK RTDGKKWRCS RNVIPDQKYC ERHTHKSRPR SRKHVESSHQ SSHHNDIRTA
301: KNDTSQLVRT YPQFYGQPIS QIPVLSTLPS ASSPYDHHRG LRWFTKEDDA IGTLNPETQE AVQLKVGSSR ELKRGFDYDL NFRQKEPIVD QSFGALQGLL
401: SLNQTPQHNQ ETRQFVVEGK QDEAMGSSLT LSMAGGGMEE TEGTNQHQWV SHEGPSWLYS TTPGGPLAEA LCLGVSNNPS SSTTTSSCSR SSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)