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AT4G24020.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NIN like protein 7
Curator
Summary (TAIR10)
Encodes NIN Like Protein 7 (NLP7). Modulates nitrate sensing and metabolism. Mutants of NLP7 show features of nitrogen-starved plants and are tolerant to drought stress. Localized in the nucleus and functions as a putative transcription factor.
Computational
Description (TAIR10)
NIN like protein 7 (NLP7); CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT1G64530.1); Has 724 Blast hits to 614 proteins in 51 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 15; Plants - 632; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKB2eggNOG:ENOG4110HDWEMBL:AC002343EMBL:AK228452
EMBL:AL109619EMBL:AL161560EMBL:BT005776EMBL:CP002687
EnsemblPlants:AT4G24020EnsemblPlants:AT4G24020.1entrez:828502GeneID:828502
Genevisible:Q84TH9GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009414GO:GO:0010118GO:GO:0010167
GO:GO:0042128Gramene:AT4G24020.1hmmpanther:PTHR32002hmmpanther:PTHR32002:SF4
HOGENOM:HOG000237689InParanoid:Q84TH9InterPro:IPR000270InterPro:IPR003035
InterPro:IPR029016iPTMnet:Q84TH9KEGG:ath:AT4G24020ncoils:Coil
OMA:EIPRSSRPaxDb:Q84TH9Pfam:PF00564Pfam:PF02042
Pfam:Q84TH9Pfscan:PS51519Pfscan:PS51745PhylomeDB:Q84TH9
PIR:E85276PIR:T08921PRIDE:Q84TH9PRO:PR:Q84TH9
PROSITE:PS51519PROSITE:PS51745ProteinModelPortal:Q84TH9Proteomes:UP000006548
RefSeq:NP_194133.1SMART:SM00666SMR:Q84TH9STRING:3702.AT4G24020.1
SUPFAM:SSF54277SUPFAM:SSF55781TAIR:AT4G24020tair10-symbols:NLP7
UniGene:At.32386UniProt:Q84TH9
Coordinates (TAIR10) chr4:+:12479904..12483822
Molecular Weight (calculated) 105748.00 Da
IEP (calculated) 5.69
GRAVY (calculated) -0.42
Length 959 amino acids
Sequence (TAIR10)
(BLAST)
001: MCEPDDNSAR NGVTTQPSRS RELLMDVDDL DLDGSWPLDQ IPYLSSSNRM ISPIFVSSSS EQPCSPLWAF SDGGGNGFHH ATSGGDDEKI SSVSGVPSFR
101: LAEYPLFLPY SSPSAAENTT EKHNSFQFPS PLMSLVPPEN TDNYCVIKER MTQALRYFKE STEQHVLAQV WAPVRKNGRD LLTTLGQPFV LNPNGNGLNQ
201: YRMISLTYMF SVDSESDVEL GLPGRVFRQK LPEWTPNVQY YSSKEFSRLD HALHYNVRGT LALPVFNPSG QSCIGVVELI MTSEKIHYAP EVDKVCKALE
301: AVNLKSSEIL DHQTTQICNE SRQNALAEIL EVLTVVCETH NLPLAQTWVP CQHGSVLANG GGLKKNCTSF DGSCMGQICM STTDMACYVV DAHVWGFRDA
401: CLEHHLQKGQ GVAGRAFLNG GSCFCRDITK FCKTQYPLVH YALMFKLTTC FAISLQSSYT GDDSYILEFF LPSSITDDQE QDLLLGSILV TMKEHFQSLR
501: VASGVDFGED DDKLSFEIIQ ALPDKKVHSK IESIRVPFSG FKSNATETML IPQPVVQSSD PVNEKINVAT VNGVVKEKKK TEKKRGKTEK TISLDVLQQY
601: FTGSLKDAAK SLGVCPTTMK RICRQHGISR WPSRKIKKVN RSITKLKRVI ESVQGTDGGL DLTSMAVSSI PWTHGQTSAQ PLNSPNGSKP PELPNTNNSP
701: NHWSSDHSPN EPNGSPELPP SNGHKRSRTV DESAGTPTSH GSCDGNQLDE PKVPNQDPLF TVGGSPGLLF PPYSRDHDVS AASFAMPNRL LGSIDHFRGM
801: LIEDAGSSKD LRNLCPTAAF DDKFQDTNWM NNDNNSNNNL YAPPKEEAIA NVACEPSGSE MRTVTIKASY KDDIIRFRIS SGSGIMELKD EVAKRLKVDA
901: GTFDIKYLDD DNEWVLIACD ADLQECLEIP RSSRTKIVRL LVHDVTTNLG SSCESTGEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)