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AT4G23940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:22923678 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:16618929 (2006): unclear
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FtsH extracellular protease family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FtsH extracellular protease family; FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0465eggNOG:KOG0731EMBL:AC002343EMBL:AL078468EMBL:AL161560EMBL:CP002687EnsemblPlants:AT4G23940
EnsemblPlants:AT4G23940.1entrez:828494Gene3D:3.40.50.300GeneID:828494Genevisible:O22993GO:GO:0004176GO:GO:0004222
GO:GO:0005524GO:GO:0005739GO:GO:0006508GO:GO:0008237GO:GO:0009507GO:GO:0009536GO:GO:0009658
GO:GO:0009706GO:GO:0009793GO:GO:0009941GO:GO:0010020GO:GO:0016021GO:GO:0043572Gramene:AT4G23940.1
hmmpanther:PTHR23076hmmpanther:PTHR23076:SF71HOGENOM:HOG000029491InterPro:IPR000642InterPro:IPR003593InterPro:IPR003959InterPro:IPR027417
iPTMnet:O22993KEGG:ath:AT4G23940OMA:WPIAKPFPaxDb:O22993Pfam:PF00004Pfam:PF01434PhylomeDB:O22993
PIR:T08913ProteinModelPortal:O22993Proteomes:UP000006548RefSeq:NP_567691.1SMART:SM00382SMR:O22993STRING:3702.AT4G23940.1
SUPFAM:SSF140990SUPFAM:SSF52540TAIR:AT4G23940TMHMM:TMhelixUniGene:At.3392UniProt:O22993
Coordinates (TAIR10) chr4:+:12437108..12441841
Molecular Weight (calculated) 105549.00 Da
IEP (calculated) 8.00
GRAVY (calculated) -0.21
Length 946 amino acids
Sequence (TAIR10)
(BLAST)
001: MASIDNVFSL GTRFSIPENP KRSILKHATT SSFSARTQTR WRAPILRRSF TVLCELKTGS SSSGETNNSP AADDFVTRVL KENPSQVEPR YRVGDKLYNL
101: KEREDLSKGT NAATGAFEFI KRKFDSKKKT ETDKSEESVY LSDILREYKG KLYVPEQVFG PELSEEEEFE KNVKDLPKMS LEDFRKAMEN DKVKLLTSKE
201: VSGVSYTSGY RGFIVDLKEI PGVKSLQRTK WSMKLEVGEA QALLKEYTGP QYEIERHMTS WVGKVADFPN PVASSISSRV MVELGMVTAV IAAAAVVVGG
301: FLASAVFAVT SFAFVTTVYV VWPIAKPFLK LFVGVFLGVL EKSWDYIVDV LADGGIFSRI SDFYTFGGVA SSLEMLKPIL LVVMTMVLLV RFTLSRRPKN
401: FRKWDLWQGI AFSQSKAEAR VDGSTGVKFA DVAGIDEAVD ELQELVKYLK NPDLFDKMGI KPPHGVLLEG PPGCGKTLVA KAIAGEAGVP FYQMAGSEFV
501: EVLVGVGSAR IRDLFKRAKV NKPSVIFIDE IDALATRRQG IFKENSDQLY NAATQERETT LNQLLIELDG FDTGKGVIFL GATNRRDLLD PALLRPGRFD
601: RKIRVRPPNA KGRLDILKIH ASKVKMSDSV DLSSYASNLP GWSGAKLAQL VQEAALVAVR KTHNSILQSD MDDAVDRLTV GPTRIGLELG HQGQCRRATT
701: EVGVAITSHL LLRYENAKIE RCDRVSIIPR GQTLSQVVFH RLDDESYMFG RLPQLLHRLQ VLLGGRAAEE VIYGSDTSKA SVDYLSDASW LARKILTIWN
801: LENPMVIHGE PPPWRKRPQF VGPRLDFEGS LYDDYDLVEP PVNFNMDDEV AHRSEELISQ MYNKTVSLLR QNQTALLKTV KVLLNQKEIS GEAIDFILDH
901: YPPQTPLNSL LQEQNPGSLP FVPEHLRRES GDFVLVNHST DVNAQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)