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AT4G23930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.891
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT1G64450.1); Has 327 Blast hits to 319 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 327; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVY7eggNOG:ENOG410YJ95EMBL:AL078468EMBL:AL161560
EMBL:BT002843EMBL:BT004441EMBL:CP002687EnsemblPlants:AT4G23930
EnsemblPlants:AT4G23930.1entrez:828493ExpressionAtlas:Q9T0A8GeneID:828493
GO:GO:0016021Gramene:AT4G23930.1hmmpanther:PTHR31852hmmpanther:PTHR31852:SF22
HOGENOM:HOG000084096InterPro:IPR004864KEGG:ath:AT4G23930OMA:QMAGRIR
Pfam:PF03168PhylomeDB:Q9T0A8PIR:T08912Proteomes:UP000006548
RefSeq:NP_194124.1TAIR:AT4G23930TMHMM:TMhelixUniGene:At.32395
UniProt:Q9T0A8
Coordinates (TAIR10) chr4:-:12436131..12436694
Molecular Weight (calculated) 20234.30 Da
IEP (calculated) 10.05
GRAVY (calculated) 0.28
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKSCSNLAS CAVATLFIVF LIIAALTVYL TVFRPRDPEI SVTSVKVPSF SVANSSVSFT FSQFSAVRNP NRAAFSHYNN VIQLFYYGNR IGYTFVPAGE
101: IESGRTKRML ATFSVQSFPL AAASSSQISA AQFQNSDRSG STVEIESKLE MAGRVRVLGL FTHRIAAKCN CRIAISSSDG SIVAVRC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)