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AT4G23920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : UDP-D-glucose/UDP-D-galactose 4-epimerase 2
Curator
Summary (TAIR10)
Encodes a protein with UDP-D-glucose 4-epimerase activity. Involved in growth and cell wall carbohydrate biosynthesis.
Computational
Description (TAIR10)
UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (UGE2); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (TAIR:AT4G10960.1); Has 45788 Blast hits to 45762 proteins in 3004 species: Archae - 838; Bacteria - 27545; Metazoa - 690; Fungi - 619; Plants - 1224; Viruses - 37; Other Eukaryotes - 14835 (source: NCBI BLink).
Protein Annotations
BioGrid:13781BRENDA:5.1.3.2BRENDA:5.1.3.5EC:5.1.3.2eggNOG:COG1087eggNOG:KOG1371EMBL:AK118722
EMBL:AL078468EMBL:AL161560EMBL:AY084615EMBL:BT008539EMBL:CP002687EnsemblPlants:AT4G23920EnsemblPlants:AT4G23920.1
entrez:822483entrez:828492Gene3D:3.40.50.720GeneID:828492Genevisible:Q9T0A7GO:GO:0003978GO:GO:0005829
GO:GO:0006012GO:GO:0042546GO:GO:0071555Gramene:AT4G23920.1hmmpanther:PTHR10366hmmpanther:PTHR10366:SF462HOGENOM:HOG000168001
InParanoid:Q9T0A7IntAct:Q9T0A7InterPro:IPR005886InterPro:IPR016040KEGG:00052+5.1.3.2KEGG:00520+5.1.3.2KEGG:ath:AT4G23920
KO:K01784OMA:CGCKVYNPaxDb:Q9T0A7Pfam:PF16363Pfam:Q9T0A7PhylomeDB:Q9T0A7PIR:T08911
PRIDE:Q9T0A7PRO:PR:Q9T0A7ProteinModelPortal:Q9T0A7Proteomes:UP000006548Reactome:R-ATH-70370RefSeq:NP_194123.1SABIO-RK:Q9T0A7
SMR:Q9T0A7STRING:3702.AT4G23920.1SUPFAM:SSF51735TAIR:AT4G23920tair10-symbols:ATUGE2tair10-symbols:UGE2TIGRfam:TIGR01179
TIGRFAMs:TIGR01179UniGene:At.3390UniPathway:UPA00214UniProt:Q9T0A7
Coordinates (TAIR10) chr4:+:12431416..12433666
Molecular Weight (calculated) 38384.50 Da
IEP (calculated) 6.72
GRAVY (calculated) -0.27
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKSVLVTGG AGYIGSHTVL QLLEGGYSAV VVDNYDNSSA ASLQRVKKLA GENGNRLSFH QVDLRDRPAL EKIFSETKFD AVIHFAGLKA VGESVEKPLL
101: YYNNNIVGTV TLLEVMAQYG CKNLVFSSSA TVYGWPKEVP CTEESPISAT NPYGRTKLFI EEICRDVHRS DSEWKIILLR YFNPVGAHPS GYIGEDPLGV
201: PNNLMPYVQQ VAVGRRPHLT VFGTDYKTKD GTGVRDYIHV MDLADGHIAA LRKLDDLKIS CEVYNLGTGN GTSVLEMVAA FEKASGKKIP LVMAGRRPGD
301: AEVVYASTEK AERELNWKAK NGIEEMCRDL WNWASNNPYG YNSSSNGSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)