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AT4G23890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Protein Annotations
EC:1.6.5.-eggNOG:ENOG410IXMJeggNOG:ENOG41129S2EMBL:AL078468EMBL:AL161560EMBL:AY058143EMBL:AY087028
EMBL:AY128349EMBL:BT000002EMBL:CP002687EnsemblPlants:AT4G23890EnsemblPlants:AT4G23890.1entrez:828489GeneID:828489
Genevisible:Q9T0A4GO:GO:0006810GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009767GO:GO:0010598
GO:GO:0016491GO:GO:0048038Gramene:AT4G23890.1hmmpanther:PTHR35494hmmpanther:PTHR35494:SF1HOGENOM:HOG000242189InterPro:IPR021659
iPTMnet:Q9T0A4KEGG:ath:AT4G23890ncoils:CoilOMA:CILEPLIPaxDb:Q9T0A4Pfam:PF11623Pfam:Q9T0A4
PhylomeDB:Q9T0A4PIR:T08908PRIDE:Q9T0A4PRO:PR:Q9T0A4ProteinModelPortal:Q9T0A4Proteomes:UP000006548RefSeq:NP_194120.1
SMR:Q9T0A4STRING:3702.AT4G23890.1TAIR:AT4G23890UniGene:At.48899UniGene:At.75570UniProt:Q9T0A4
Coordinates (TAIR10) chr4:-:12420593..12421345
Molecular Weight (calculated) 27728.30 Da
IEP (calculated) 8.46
GRAVY (calculated) -0.76
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSSITIPT IRTPIHRSKF LGQTHQFSTV NRSVFPPPKQ QSKLYQVKAM GKFNLWEVMG GRGLCNGEKG IEKELQRNIE DEQETSKAEN NETERESDDS
101: NLSFKVPEDG FEKEMMGLTG GFPGGEKGLK TFIEKNPPPP PPPPPAKQGS DASAVATDKK PKAPKLPLLM PGMIAIVKNQ NSPYHMYCGI VQRITDGKAG
201: VLFEGGNWDR LITFRLEELE RREKGPPGKN PKSCILEPLI EQMQKEEAAP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)