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AT4G23880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 73 Blast hits to 69 proteins in 22 species: Archae - 0; Bacteria - 4; Metazoa - 9; Fungi - 2; Plants - 18; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXS8eggNOG:ENOG41103QIEMBL:AK221409EMBL:AL078468
EMBL:AL161560EMBL:BT012173EMBL:CP002687EnsemblPlants:AT4G23880
EnsemblPlants:AT4G23880.1entrez:828487GeneID:828487Gramene:AT4G23880.1
hmmpanther:PTHR36782HOGENOM:HOG000153577KEGG:ath:AT4G23880OMA:QIAHVPV
PhylomeDB:Q9T0A3PIR:T08907Proteomes:UP000006548RefSeq:NP_194119.1
TAIR:AT4G23880UniGene:At.49713UniProt:Q9T0A3
Coordinates (TAIR10) chr4:-:12415789..12416388
Molecular Weight (calculated) 23304.10 Da
IEP (calculated) 7.02
GRAVY (calculated) -0.89
Length 199 amino acids
Sequence (TAIR10)
(BLAST)
001: MMDSLAKCFN RLQERYDNVL EAKPIYRDDL DITLPLNESK EVSVESTKKS RCLQRAKRID KSLRFEEGEE EEDEQNKKPL AKPRKVVRFQ LENNKIFEPK
101: KTVSFDDDHE LKPKENPLEE KESLKMVEGK EEVVRVKIKM TKHEAQRLLS KCKNDSVLKL EHLMDQIAHV PVHQLQVAMV MVGCNNERQG NGCWLSQLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)