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AT4G23840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.526
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat family protein (TAIR:AT1G15740.1); Has 13188 Blast hits to 8222 proteins in 561 species: Archae - 2; Bacteria - 5781; Metazoa - 2271; Fungi - 110; Plants - 3199; Viruses - 40; Other Eukaryotes - 1785 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKECeggNOG:ENOG4111838EMBL:AK176593EMBL:AY099739EMBL:AY128902EMBL:CP002687EnsemblPlants:AT4G23840
EnsemblPlants:AT4G23840.1entrez:828483Gene3D:3.80.10.10GeneID:828483Gramene:AT4G23840.1hmmpanther:PTHR24006HOGENOM:HOG000078805
InterPro:IPR001611InterPro:IPR006553InterPro:IPR032675KEGG:ath:AT4G23840OMA:NIPHLECPfam:PF13516PhylomeDB:Q8L4C7
Proteomes:UP000006548RefSeq:NP_194115.3SMART:SM00367SMR:Q8L4C7STRING:3702.AT4G23840.1SUPFAM:SSF52047SUPFAM:SSF52058
TAIR:AT4G23840UniGene:At.32402UniProt:Q8L4C7
Coordinates (TAIR10) chr4:+:12400379..12403190
Molecular Weight (calculated) 65768.30 Da
IEP (calculated) 7.01
GRAVY (calculated) -0.03
Length 597 amino acids
Sequence (TAIR10)
(BLAST)
001: MESPLVRLCL KEACKSGDAV ERWRLQRRSL ESLPPHLADA LLRRLLKKRL LFPSLLEGFK YSVENIDLRG KSSVNAEWMA YIGGFVNLIT LNLSDCQRIN
101: SSTLWPITGL TSLTELDLSR CFKVTDAGMK HLQSVVNLKK LWISQTGVTE VGISLLASLK KLSLLDLGGL PVTDQNLISL QALTKLEYLD IWGSNVTNQG
201: AVSILKFSNL SFLNLSWTSI TQTPNIPHLE CLHMNTCTIV SEPKTHSSLA SLKKLVLSGA NFSAETESLS FTNKSCITYL DVSKTSLKNF SFLETMFNLE
301: HLDLSSTAFG DDSVGFVACV GENLKNLNVS DTQITPSGVG NLAGHVPQLE TLSMSQTFVD DLSILLISTT MPCIKALDLG MNSTLGFYYL ISPQEEKEKS
401: LAALQSLTSL ETLSLEHPYL GDKALSGLSS LTGLTHLSLT STSLTDSTLH HLSSLPNLVS LGVRDGVLTS NGLEKFRPPN RLRTLDLQGC WLLTKDDIAG
501: LCKRYPHIKV RHEHADSSSL DQNQLLPRSS TPQSFGKVAR RNNQRPESSV AVPRSFLDQR VKYNREELVA LQNSPLSQLL PWEELVSVPE LLADSVI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)