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AT4G23810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WRKY family transcription factor
Curator
Summary (TAIR10)
member of WRKY Transcription Factor; Group III
Computational
Description (TAIR10)
WRKY53; FUNCTIONS IN: protein binding, DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY family transcription factor (TAIR:AT4G11070.1); Has 3150 Blast hits to 2715 proteins in 122 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3139; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BioGrid:13770eggNOG:ENOG410IM0HeggNOG:ENOG410YZU1EMBL:AF272748EMBL:AF370614EMBL:AK227938EMBL:AL035394
EMBL:AL161560EMBL:BT033113EMBL:CP002687EnsemblPlants:AT4G23810EnsemblPlants:AT4G23810.1entrez:828481Gene3D:2.20.25.80
GeneID:828481Genevisible:Q9SUP6GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009507
GO:GO:0009751GO:GO:0009816GO:GO:0010150GO:GO:0010193GO:GO:0010200GO:GO:0031347GO:GO:0042542
GO:GO:0043565GO:GO:0045893Gramene:AT4G23810.1hmmpanther:PTHR32096hmmpanther:PTHR32096:SF20HOGENOM:HOG000006380InParanoid:Q9SUP6
IntAct:Q9SUP6InterPro:IPR003657iPTMnet:Q9SUP6KEGG:ath:AT4G23810OMA:CTHRSTQPaxDb:Q9SUP6Pfam:PF03106
Pfam:Q9SUP6Pfscan:PS50811PhylomeDB:Q9SUP6PIR:T05613PRIDE:Q9SUP6PRO:PR:Q9SUP6PROSITE:PS50811
ProteinModelPortal:Q9SUP6Proteomes:UP000006548RefSeq:NP_194112.1SMART:SM00774SMR:Q9SUP6STRING:3702.AT4G23810.1SUPFAM:0050605
SUPFAM:SSF118290TAIR:AT4G23810tair10-symbols:ATWRKY53tair10-symbols:WRKY53UniGene:At.2572UniGene:At.71059UniProt:Q9SUP6
Coordinates (TAIR10) chr4:-:12392666..12393739
Molecular Weight (calculated) 36274.40 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.60
Length 324 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGRDMLSWE QKTLLSELIN GFDAAKKLQA RLREAPSPSS SFSSPATAVA ETNEILVKQI VSSYERSLLL LNWSSSPSVQ LIPTPVTVVP VANPGSVPES
101: PASINGSPRS EEFADGGGSS ESHHRQDYIF NSKKRKMLPK WSEKVRISPE RGLEGPQDDV FSWRKYGQKD ILGAKFPRSY YRCTHRSTQN CWATKQVQRS
201: DGDATVFEVT YRGTHTCSQA ITRTPPLASP EKRQDTRVKP AITQKPKDIL ESLKSNLTVR TDGLDDGKDV FSFPDTPPFY NYGTINGEFG HVESSPIFDV
301: VDWFNPTVEI DTTFPAFLHE SIYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)