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AT4G23720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1191)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1191); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1191 (InterPro:IPR010605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1191) (TAIR:AT4G01140.1); Has 106 Blast hits to 106 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZU5eggNOG:ENOG4111YT8EMBL:AY773889EMBL:CP002687EnsemblPlants:AT4G23720EnsemblPlants:AT4G23720.1entrez:828472
GeneID:828472GO:GO:0005886GO:GO:0016021Gramene:AT4G23720.1hmmpanther:PTHR33512hmmpanther:PTHR33512:SF4HOGENOM:HOG000240969
InterPro:IPR010605KEGG:ath:AT4G23720OMA:IQVMMERPfam:PF06697PhylomeDB:Q5S4T6Proteomes:UP000006548RefSeq:NP_194103.2
TAIR:AT4G23720TMHMM:TMhelixUniGene:At.51030UniProt:Q5S4T6
Coordinates (TAIR10) chr4:+:12358707..12359648
Molecular Weight (calculated) 35189.40 Da
IEP (calculated) 8.48
GRAVY (calculated) -0.05
Length 313 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSKSLTCCV VFLLHTSLFS STLQSSLIHL NSTTSILNVT LPHSLSQSLE NFALKTLTTQ HHTGALYRAI LPENLSGIEV SVVRLTGKSL WNSGAKFSNV
101: LIPERSVSVP PARRVVIVYQ NLGNWSNHWY TVPGYRLITS VLGFKVLDVS DQDNVKEIIL KMKNPVEVSF RDLPKERDEE MLSRVRCVSF KAQTKDEEAT
201: HISRMVIPGV CYGSSHGDYS VIEPLENDKK NVESWSTWWW LWIVGFVLGF GLLGFLCTMG IRVSRAKKIQ VMMERDANDG EVFESRWFGG SKMPSAAVTR
301: TLPELESGFE RVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)