AT4G23700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cation/H+ exchanger 17 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Putative Na+/H+ antiporter family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cation/H+ exchanger 17 (CHX17); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: N-terminal protein myristoylation, cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: stem, sepal, root, leaf, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 18 (TAIR:AT5G41610.1); Has 10581 Blast hits to 10541 proteins in 2184 species: Archae - 402; Bacteria - 8255; Metazoa - 59; Fungi - 207; Plants - 679; Viruses - 0; Other Eukaryotes - 979 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12342534..12345616 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89170.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.91 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.37 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 820 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTNGTTCPG PMKATSNGVF QGENPLEHAL PLLILQICIV LLLTRLLAFL LRPLRQPRVI AEIVGGILLG PSALGKSTKF INTVFPPKSL TVLDTLANLG 101: LIFFLFLVGL ELDPKSLKRT GKRALSIALA GITLPFVLGI GTSFALRSSI ADGASKAPFL VFMGVALSIT AFPVLARILA EIKLLTTDIG KIALSAAAVN 201: DVAAWILLAL AVALSGEGSS PLTSLWVFLS GCGFVLFCIF VVQPGIKLIA KRCPEGEPVN ELYVCCTLGI VLAASFVTDF IGIHALFGAF VIGVIFPKEG 301: NFANALVEKV EDLVSGLFLP LYFVSSGLKT NVATIQGAQS WGLLVLVIFN ACFGKIIGTV LVSLYCKVPL DQSLALGFLM NTKGLVELIV LNIGKDRGVL 401: NDQIFAIMVL MAIFTTFMTT PLVLAVYKPG KSLTKADYKN RTVEETNRSN KPLCLMFCFQ SIMNIPTIVN LIEASRGINR KENLSVYAMH LMELSERSSA 501: ILMAHKVRRN GLPFWNKDKS ENNSSSSDMV VVAFEAFRRL SRVSVRPMTA ISPMATIHED ICQSAERKKT AMVILPFHKH VRLDRTWETT RNDYRWINKK 601: VMEESPCSVA ILVDRGLGGT TRVASSDFSL TITVLFFGGN DDREALAFAV RMAEHPGISL TVVRFIPSDE FKPENVRIEI TEDQLCSGAT RLIDIEAITE 701: LKAKIKEKES SRSNSDSESH IIYEEKIVKC YEEVIEVIKE YSKSNLFLVG KSPEGSVASG INVRSDTPEL GPIGNLLTES ESVSTVASVL VVQQYIASRP 801: VGISKNVTTE ESLVEDSESP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)