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AT4G23690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Disease resistance-responsive (dirigent-like protein) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance-responsive (dirigent-like protein) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: lignan biosynthetic process, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant disease resistance response protein (InterPro:IPR004265); BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT1G64160.1); Has 772 Blast hits to 771 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 772; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1444-MONOMERDNASU:828469eggNOG:ENOG410JB8BeggNOG:ENOG410Z0E4EMBL:AL035394EMBL:AL161559EMBL:AY088422
EMBL:BT002439EMBL:CP002687EnsemblPlants:AT4G23690EnsemblPlants:AT4G23690.1entrez:828469GeneID:828469Genevisible:Q9SUQ8
GO:GO:0042349GO:GO:0042802GO:GO:0042803GO:GO:0048046GO:GO:0050790GO:GO:1901599Gramene:AT4G23690.1
hmmpanther:PTHR21495hmmpanther:PTHR21495:SF40HOGENOM:HOG000242476InParanoid:Q9SUQ8InterPro:IPR004265KEGG:ath:AT4G23690MINT:MINT-8342897
OMA:FRKTIDQPaxDb:Q9SUQ8Pfam:PF03018Pfam:Q9SUQ8PhylomeDB:Q9SUQ8PIR:T05601PRIDE:Q9SUQ8
PRO:PR:Q9SUQ8ProteinModelPortal:Q9SUQ8Proteomes:UP000006548RefSeq:NP_194100.1SMR:Q9SUQ8STRING:3702.AT4G23690.1TAIR:AT4G23690
TMHMM:TMhelixUniGene:At.20823UniProt:Q9SUQ8
Coordinates (TAIR10) chr4:-:12339152..12339715
Molecular Weight (calculated) 21413.00 Da
IEP (calculated) 8.61
GRAVY (calculated) 0.14
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFLVEKQLF KALFSFFLLV LLFSDTVLSF RKTIDQKKPC KHFSFYFHDI LYDGDNVANA TSAAIVSPPG LGNFKFGKFV IFDGPITMDK NYLSKPVARA
101: QGFYFYDMKM DFNSWFSYTL VFNSTEHKGT LNIMGADLMM EPTRDLSVVG GTGDFFMARG IATFVTDLFQ GAKYFRVKMD IKLYECY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)