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AT4G23670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.985
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:15574830 (2004): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Polyketide cyclase/dehydrase and lipid transport superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to cadmium ion, response to salt stress, defense response to bacterium; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT4G23680.1); Has 355 Blast hits to 331 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 355; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JF95eggNOG:ENOG41113R7EMBL:AF389297EMBL:AK317658EMBL:AL035394EMBL:AL161559EMBL:AY084471
EMBL:AY091676EMBL:CP002687EnsemblPlants:AT4G23670EnsemblPlants:AT4G23670.1entrez:828467Gene3D:3.30.530.20GeneID:828467
GO:GO:0005507GO:GO:0005773GO:GO:0009651GO:GO:0042742GO:GO:0046686Gramene:AT4G23670.1hmmpanther:PTHR31338
hmmpanther:PTHR31338:SF15HOGENOM:HOG000239987IntAct:Q9SUR0InterPro:IPR000916InterPro:IPR023393KEGG:ath:AT4G23670ncoils:Coil
OMA:KSWKSENPfam:PF00407PhylomeDB:Q9SUR0PIR:T05599Proteomes:UP000006548RefSeq:NP_194098.1SMART:SM01037
SMR:Q9SUR0STRING:3702.AT4G23670.1SUPFAM:SSF55961TAIR:AT4G23670UniGene:At.25160UniGene:At.25232UniGene:At.72676
UniProt:Q9SUR0
Coordinates (TAIR10) chr4:-:12332846..12333656
Molecular Weight (calculated) 17518.70 Da
IEP (calculated) 6.34
GRAVY (calculated) -0.74
Length 151 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSGTYVTE VPLKGSAEKH YKSWKSENHV FADAIGHHIQ NVVVHEGEHD SHGSIRSWDY TYDGKKEMFK EKREIDDENK TLTKRGLDGH VMEHLKVFDI
101: IYEFIPKSED SCVCKITMIW EKRNDDFPEP SGYMKFVKQM VVDIEGHVNK A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)