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AT4G23610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.949
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT2G46150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVCFeggNOG:ENOG411061EEMBL:AF372921EMBL:AL035394EMBL:AL161559EMBL:AY133514EMBL:CP002687
EnsemblPlants:AT4G23610EnsemblPlants:AT4G23610.1entrez:828461Gene3D:2.60.40.10GeneID:828461GO:GO:0016021Gramene:AT4G23610.1
hmmpanther:PTHR31852hmmpanther:PTHR31852:SF23InterPro:IPR004864InterPro:IPR013783KEGG:ath:AT4G23610OMA:IPAKRTVPfam:PF03168
PhylomeDB:Q9SUR5PIR:T05593Proteomes:UP000006548RefSeq:NP_567687.1STRING:3702.AT4G23610.1SUPFAM:0051044TAIR:AT4G23610
TMHMM:TMhelixUniGene:At.2561UniGene:At.66616UniProt:Q9SUR5
Coordinates (TAIR10) chr4:+:12314037..12314723
Molecular Weight (calculated) 25790.50 Da
IEP (calculated) 9.25
GRAVY (calculated) -0.08
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MELAMSKINE DQAKPLAPLF LTTRSDQPDE EDQYHHDRTK YVHSQTKLIL CCGFIASLTM LIAVTFIVLS LTVFHLHSPN LTVDSISFNQ RFDFVNGKVN
101: TNQNTTVSVE ISLHNPNPAL FIVKNVNVSF YHGELVVVGE SIRRSETIPA KRTVKMNLTA EIVKTKLLAS LPGLMEDLNG RGVDLKSSVE VRGRVKKMKI
201: FRKTVHLQTD CFMKMTTNNF LTPTFQCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)