AT4G23520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine proteinases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT5G43060.1); Has 7771 Blast hits to 7697 proteins in 722 species: Archae - 59; Bacteria - 251; Metazoa - 3251; Fungi - 10; Plants - 1867; Viruses - 134; Other Eukaryotes - 2199 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12274457..12276219 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39606.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.73 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 356 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFVRPVCMT ILFLLIVFVL SAPSSAMDLP ATSGGHNRSN EEVEFIFQMW MSKHGKTYTN ALGEKERRFQ NFKDNLRFID QHNAKNLSYQ LGLTRFADLT 101: VQEYRDLFPG SPKPKQRNLK TSRRYVPLAG DQLPESVDWR QEGAVSEIKD QGTCNSCWAF STVAAVEGLN KIVTGELISL SEQELVDCNL VNNGCYGSGL 201: MDTAFQFLIN NNGLDSEKDY PYQGTQGSCN RKQSTSNKVI TIDSYEDVPA NDEISLQKAV AHQPVSVGVD KKSQEFMLYR SCIYNGPCGT NLDHALVIVG 301: YGSENGQDYW IVRNSWGTTW GDAGYIKIAR NFEDPKGLCG IAMLASYPIK NSASNA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)