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AT4G23490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.638
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF604)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF604); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G11350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
CAZy:GT31eggNOG:ENOG410YRJGeggNOG:KOG2246EMBL:BT002276EMBL:CP002687EMBL:KJ138741EnsemblPlants:AT4G23490
EnsemblPlants:AT4G23490.1entrez:828447GeneID:828447GO:GO:0016021GO:GO:0016740Gramene:AT4G23490.1hmmpanther:PTHR10811
hmmpanther:PTHR10811:SF11HOGENOM:HOG000239947InterPro:IPR006740KEGG:ath:AT4G23490OMA:ARIQDGCPfam:PF04646PhylomeDB:Q8H0S2
Proteomes:UP000006548RefSeq:NP_567683.1TAIR:AT4G23490TMHMM:TMhelixUniGene:At.23127UniProt:Q8H0S2
Coordinates (TAIR10) chr4:-:12251580..12253973
Molecular Weight (calculated) 60533.80 Da
IEP (calculated) 9.76
GRAVY (calculated) -0.38
Length 526 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGNQKDSSE KPIWDRSSSS TSIPGMWSLT RPGPKLMVWL ICFIVFTYII YMLKLVSTSR SCDDSTSFTT VSALSTNVSS NVSSLSTSLA SRRRNWEEEE
101: EDTVVDKLTD LNHVVFGIAA SSKLWKQRKE YIKIWYKPKR MRGYVWLDKE VKKSLSDDDD EKLLPPVKIS GGTASFPYTN KQGQRSALRI SRIVSETLRL
201: GPKNVRWFVM GDDDTVFVID NLIRVLRKYD HEQMYYIGSL SESHLQNIFF SYGMAYGGGG FAISYPLAKA LSKMQDRCIQ RYPALYGSDD RMQACMAELG
301: VPLTKELGFH QYDVYGNLFG LLAAHPVTPF VSMHHLDVVE PIFPNMTRVR ALKKITEPMK LDSAGLLQQS ICYDKHKSWT ISVSWGYAVQ IFRGIFSPRE
401: MEMPSRTFLN WYKRADYTAY AFNTRPVSRN PCQKPFVFYM SSTKFDQQLN TTVSEYTIHR VSHPSCRWKM TNPAEINTIV VYKKPDPHLW ERSPRRNCCR
501: VLQTKRNNTL WINVGVCRAG EVTEVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)