AT4G23490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF604) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF604); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G11350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12251580..12253973 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60533.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.76 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||
| Length | 526 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKGNQKDSSE KPIWDRSSSS TSIPGMWSLT RPGPKLMVWL ICFIVFTYII YMLKLVSTSR SCDDSTSFTT VSALSTNVSS NVSSLSTSLA SRRRNWEEEE 101: EDTVVDKLTD LNHVVFGIAA SSKLWKQRKE YIKIWYKPKR MRGYVWLDKE VKKSLSDDDD EKLLPPVKIS GGTASFPYTN KQGQRSALRI SRIVSETLRL 201: GPKNVRWFVM GDDDTVFVID NLIRVLRKYD HEQMYYIGSL SESHLQNIFF SYGMAYGGGG FAISYPLAKA LSKMQDRCIQ RYPALYGSDD RMQACMAELG 301: VPLTKELGFH QYDVYGNLFG LLAAHPVTPF VSMHHLDVVE PIFPNMTRVR ALKKITEPMK LDSAGLLQQS ICYDKHKSWT ISVSWGYAVQ IFRGIFSPRE 401: MEMPSRTFLN WYKRADYTAY AFNTRPVSRN PCQKPFVFYM SSTKFDQQLN TTVSEYTIHR VSHPSCRWKM TNPAEINTIV VYKKPDPHLW ERSPRRNCCR 501: VLQTKRNNTL WINVGVCRAG EVTEVK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)