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AT4G23450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AY057571EMBL:AY093984EMBL:CP002687EMBL:DQ059123EnsemblPlants:AT4G23450
EnsemblPlants:AT4G23450.1entrez:828444Gene3D:3.30.40.10GeneID:828444GO:GO:0008270GO:GO:0016874Gramene:AT4G23450.1
hmmpanther:PTHR22937hmmpanther:PTHR22937:SF24HOGENOM:HOG000005881InterPro:IPR001841InterPro:IPR013083Pfam:PF13639Pfscan:PS50089
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_567682.1SMART:SM00184STRING:3702.AT4G23450.2SUPFAM:SSF57850TAIR:AT4G23450
tair10-symbols:AIRP1tair10-symbols:AtAIRP1UniGene:At.2440UniGene:At.25204UniProt:Q93ZF6
Coordinates (TAIR10) chr4:-:12241113..12241837
Molecular Weight (calculated) 16941.20 Da
IEP (calculated) 4.57
GRAVY (calculated) -0.32
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MGCCCCLPSI PESSRTIDEH LPLSRATPSS LSNAYSSPLS PPIPLAITNI NLQTSPPKLP RTQGNSSEAS PGLTQVVPEK KTWHVDDLTD FELKKQYREA
101: IDECPICLEE YEIDNPKLLT KCGHDFHLAC ILAWMERSEA CPVCDKELVL TES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)