AT4G23440.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.978 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS class) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, innate immune response; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G56220.1); Has 636 Blast hits to 617 proteins in 139 species: Archae - 3; Bacteria - 309; Metazoa - 6; Fungi - 123; Plants - 176; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:12237765..12240659 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 109163.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.81 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||
| Length | 964 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSRGDSSRF GQYPTKPTRN MSSSSSAAFF SANQSPFFSP RSPKIQQELS ESTRSDAQCD SFDPLSSSSG FQEPELAFLT APNQCQSLEA ADRIASSSMI 101: SCTPSRYGRG HESSSYTQTS SVSVSYNRLR CCDVFIGLYG QKPSLLRFAD WLRAELEFQG MSCFMSDRGR CRSSRKQRIV ERAMDGASFG VIILTRKAFK 201: NPYTIEELRF FANKKNLVPV FFDLSPGECL VRDIVEKRGD LWEKHGGELW VLYGGIEKEW KEAVHGLSRV DDWKLEAHEG NWRDCVFRAV TLLAMRLGRR 301: SIVERLTKWR DKAEKEEFPY PRNESFVGRK KELSELEFVL FGDVAGDSER DYFELKARPT RRKKNVTLGW NKSGSAEERR KKGKEKVVWK ESEKEIEMQS 401: TEMPSRSQVK VGRNTRRKRS MKVVYGKGVA CVSGESGIGK TELLLEFAYR HHQRYKMVLW IGGESRYIRQ NYLNLYQYLE VDIGIENSSD KTRMKSFEEQ 501: EDAAVSKIRK ELMRNIPFLV VIDNLESEKD WWDSKLVMDL LPRFGGGTHI LISTRLSQVM NMEPLKLSYL SGAEAMSLMQ GNVKDYPVSE MDALRTIEDK 601: LGRLTLGLAV VGAILSELPI NPSRLLDTIN RMPLREMVCS GREGNLLRRN AFLLQLFEVC FSIFDHADGP RSLATRMVVA SGWLAPAPVP ASLLALAAHK 701: LPEKHRGPKR LWRRLRRAIT CGFTSSNSKR SGAEAASMLL RFNIARTSSI KLGFIQIHEL VKLYARNRVL VNENAPAMVQ AVISRGSTVE TAEQIWAVCF 801: LLFGFSNESP TIQLKITELL ILVKQVILPL AIRTFISFSR CTASVELLRV CTNALEAADQ TLVTPVEKWL DKSLCWRPVQ TSAQLNPILW EELALARATV 901: LETRAKLMLR GGQFGLADDL IRKAIFIRTS ISGEDHPGTV SARETLSKLT RLLSNVHQIH NTSP |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)