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AT4G23440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.628
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS class)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, innate immune response; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G56220.1); Has 636 Blast hits to 617 proteins in 139 species: Archae - 3; Bacteria - 309; Metazoa - 6; Fungi - 123; Plants - 176; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IMBReggNOG:ENOG410ZUB6EMBL:AL031326EMBL:AL161559EMBL:CP002687EnsemblPlants:AT4G23440EnsemblPlants:AT4G23440.1
entrez:828443Gene3D:3.40.50.300GeneID:828443GO:GO:0005524GO:GO:0005886GO:GO:0007165Gramene:AT4G23440.1
hmmpanther:PTHR32472hmmpanther:PTHR32472:SF11HOGENOM:HOG000238291InterPro:IPR000157InterPro:IPR027417KEGG:ath:AT4G23440OMA:RETSFSC
Pfam:PF13676PhylomeDB:O81740PIR:T05382Proteomes:UP000006548RefSeq:NP_194075.1SMR:O81740SUPFAM:SSF52200
SUPFAM:SSF52540TAIR:AT4G23440UniGene:At.2440UniProt:O81740
Coordinates (TAIR10) chr4:+:12237765..12240659
Molecular Weight (calculated) 109163.00 Da
IEP (calculated) 9.81
GRAVY (calculated) -0.32
Length 964 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSRGDSSRF GQYPTKPTRN MSSSSSAAFF SANQSPFFSP RSPKIQQELS ESTRSDAQCD SFDPLSSSSG FQEPELAFLT APNQCQSLEA ADRIASSSMI
101: SCTPSRYGRG HESSSYTQTS SVSVSYNRLR CCDVFIGLYG QKPSLLRFAD WLRAELEFQG MSCFMSDRGR CRSSRKQRIV ERAMDGASFG VIILTRKAFK
201: NPYTIEELRF FANKKNLVPV FFDLSPGECL VRDIVEKRGD LWEKHGGELW VLYGGIEKEW KEAVHGLSRV DDWKLEAHEG NWRDCVFRAV TLLAMRLGRR
301: SIVERLTKWR DKAEKEEFPY PRNESFVGRK KELSELEFVL FGDVAGDSER DYFELKARPT RRKKNVTLGW NKSGSAEERR KKGKEKVVWK ESEKEIEMQS
401: TEMPSRSQVK VGRNTRRKRS MKVVYGKGVA CVSGESGIGK TELLLEFAYR HHQRYKMVLW IGGESRYIRQ NYLNLYQYLE VDIGIENSSD KTRMKSFEEQ
501: EDAAVSKIRK ELMRNIPFLV VIDNLESEKD WWDSKLVMDL LPRFGGGTHI LISTRLSQVM NMEPLKLSYL SGAEAMSLMQ GNVKDYPVSE MDALRTIEDK
601: LGRLTLGLAV VGAILSELPI NPSRLLDTIN RMPLREMVCS GREGNLLRRN AFLLQLFEVC FSIFDHADGP RSLATRMVVA SGWLAPAPVP ASLLALAAHK
701: LPEKHRGPKR LWRRLRRAIT CGFTSSNSKR SGAEAASMLL RFNIARTSSI KLGFIQIHEL VKLYARNRVL VNENAPAMVQ AVISRGSTVE TAEQIWAVCF
801: LLFGFSNESP TIQLKITELL ILVKQVILPL AIRTFISFSR CTASVELLRV CTNALEAADQ TLVTPVEKWL DKSLCWRPVQ TSAQLNPILW EELALARATV
901: LETRAKLMLR GGQFGLADDL IRKAIFIRTS ISGEDHPGTV SARETLSKLT RLLSNVHQIH NTSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)