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AT4G23410.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.970
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tetraspanin5
Curator
Summary (TAIR10)
Member of TETRASPANIN family
Computational
Description (TAIR10)
tetraspanin5 (TET5); INVOLVED IN: aging; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: tetraspanin6 (TAIR:AT3G12090.1); Has 435 Blast hits to 433 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 0; Plants - 389; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWJDeggNOG:ENOG41104VKEMBL:AL031326EMBL:AL161559EMBL:BT003875EMBL:BT008602EMBL:CP002687
EnsemblPlants:AT4G23410EnsemblPlants:AT4G23410.1entrez:828440GeneID:828440Genevisible:Q84WF6GO:GO:0016021Gramene:AT4G23410.1
hmmpanther:PTHR32191hmmpanther:PTHR32191:SF1HOGENOM:HOG000238911InParanoid:Q84WF6InterPro:IPR018499KEGG:ath:AT4G23410OMA:RMSNTVI
PaxDb:Q84WF6Pfam:PF00335Pfam:Q84WF6PIR:H85268PIR:T05379PRIDE:Q84WF6PRO:PR:Q84WF6
Proteomes:UP000006548RefSeq:NP_194072.3STRING:3702.AT4G23410.1TAIR:AT4G23410tair10-symbols:TET5TMHMM:TMhelixUniGene:At.32432
UniProt:Q84WF6
Coordinates (TAIR10) chr4:+:12224094..12225206
Molecular Weight (calculated) 31869.20 Da
IEP (calculated) 8.67
GRAVY (calculated) 0.34
Length 281 amino acids
Sequence (TAIR10)
(BLAST)
001: MNRMSNTVIG FLNILTLISS IVLLGSALWM GRSKTTCEHF LQKPLLILGL AILILSVAGL VGACCDVAWV LWVYLFFMVF IIVALMGLTL FGFIVTSHSG
101: GVVVDGRVYK EFKLEAYHPW LKTRVVDTNY WVTIKTCLLG SVTCSKLALW TPLDYLQKDL SPLQSGCCKP PTSCVYNTDT VIQQDPDCYR WNNAATVLCY
201: DCDTCRAGVL ETVRRDWHKL SLVNVIVVIF LIAVYCVGCC AFKNAKRPQH YGFPYGRYGM SKSRPGWEQS WSRWWHGRDR Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)