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AT4G23400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : plasma membrane intrinsic protein 1;5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
plasma membrane intrinsic protein 1;5 (PIP1;5); FUNCTIONS IN: water channel activity; INVOLVED IN: response to salt stress, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1;4 (TAIR:AT4G00430.1); Has 10720 Blast hits to 10702 proteins in 2215 species: Archae - 88; Bacteria - 5150; Metazoa - 1472; Fungi - 448; Plants - 2512; Viruses - 2; Other Eukaryotes - 1048 (source: NCBI BLink).
Protein Annotations
BioGrid:13728eggNOG:COG0580eggNOG:KOG0223EMBL:AL031326EMBL:AL161559EMBL:AY059948EMBL:AY081593
EMBL:AY087945EMBL:CP002687EnsemblPlants:AT4G23400EnsemblPlants:AT4G23400.1entrez:828439Gene3D:1.20.1080.10GeneID:828439
Genevisible:Q8LAA6GO:GO:0005773GO:GO:0005886GO:GO:0006833GO:GO:0009506GO:GO:0015250GO:GO:0015254
GO:GO:0015793GO:GO:0016021GO:GO:0034220Gramene:AT4G23400.1hmmpanther:PTHR19139hmmpanther:PTHR19139:SF169HOGENOM:HOG000288286
InParanoid:Q8LAA6IntAct:Q8LAA6InterPro:IPR000425InterPro:IPR022357InterPro:IPR023271KEGG:ath:AT4G23400KO:K09872
MINT:MINT-8066081OMA:MEHREEDPANTHER:PTHR19139PaxDb:Q8LAA6Pfam:PF00230Pfam:Q8LAA6PhylomeDB:Q8LAA6
PIR:T05378PRIDE:Q8LAA6PRINTS:PR00783PRO:PR:Q8LAA6PROSITE:PS00221ProteinModelPortal:Q8LAA6Proteomes:UP000006548
Reactome:R-ATH-432047RefSeq:NP_194071.1scanprosite:PS00221SMR:Q8LAA6STRING:3702.AT4G23400.1SUPFAM:SSF81338TAIR:AT4G23400
tair10-symbols:PIP1;5tair10-symbols:PIP1DTIGRfam:TIGR00861TIGRFAMs:TIGR00861TMHMM:TMhelixUniGene:At.2438UniProt:Q8LAA6
Coordinates (TAIR10) chr4:+:12220792..12222155
Molecular Weight (calculated) 30648.40 Da
IEP (calculated) 9.08
GRAVY (calculated) 0.40
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGKEEDVNV GANKFPERQP IGTAAQTESK DYKEPPPAPF FEPGELKSWS FYRAGIAEFI ATFLFLYVTV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRALFYIVMQ CLGAICGAGV VKGFQPGLYQ TNGGGANVVA HGYTKGSGLG AEIVGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HAWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)