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AT4G23170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
SwissProt : extracellular 16381842
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25852701 (2015): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : receptor-like protein kinase-related family protein
Curator
Summary (TAIR10)
Induced in response to Salicylic acid.Similar to receptor-like kinase 4 and 5. NPR1, a known positive regulator of the SA signaling pathway is responsible for the SA-dependent induction and constitutive repression of EP1 gene's basal expression.
Computational
Description (TAIR10)
EP1; FUNCTIONS IN: protein kinase activity; INVOLVED IN: programmed cell death, response to salicylic acid stimulus; LOCATED IN: apoplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (TAIR:AT4G23160.1); Has 1472 Blast hits to 1417 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1472; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AL022347EMBL:AL161558EMBL:BT002377EMBL:BT006299EMBL:CP002687EnsemblPlants:AT4G23170EnsemblPlants:AT4G23170.1
entrez:828416GeneID:828416GO:GO:0009627GO:GO:0009751GO:GO:0012501GO:GO:0048046Gramene:AT4G23170.1
hmmpanther:PTHR32099hmmpanther:PTHR32099:SF1HOGENOM:HOG000116552InParanoid:O65469IntAct:O65469InterPro:IPR002902iPTMnet:O65469
KEGG:ath:AT4G23170OMA:HESCHLSPaxDb:O65469Pfam:O65469Pfam:PF01657Pfscan:PS51473PhylomeDB:O65469
PIR:T04834PRIDE:O65469PROSITE:PS51473ProteinModelPortal:O65469Proteomes:UP000006548RefSeq:NP_194048.1SMR:O65469
STRING:3702.AT4G23170.1TAIR:AT4G23170tair10-symbols:CRK9tair10-symbols:EP1UniGene:At.2195UniProt:O65469
Coordinates (TAIR10) chr4:+:12135205..12136002
Molecular Weight (calculated) 29724.00 Da
IEP (calculated) 6.93
GRAVY (calculated) -0.19
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSLISFIFL FLFSFLTSFK ASAQDPFYLN HYCPNTTTYS RFSTYSTNLR TLLSSFASRN ASYSTGFQNV TVGQTPDLVT GLFLCRGDLS PEVCSNCVAF
101: SVDEALTRCP SQREAVFYYE ECILRYSDKN ILSTAITNEG EFILSNTNTI SPNQSQINQF IVLVQSNMNQ AAMEAANSSR KFSTIKTELT ELQTLYGLVQ
201: CTPDLTSQDC LRCLTRSINR MPLSRIGARQ FWPSCNSRYE LYSFYNETTI GTPSPPPPPS PSRAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)