AT4G23050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.964 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PAS domain-containing protein tyrosine kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PAS domain-containing protein tyrosine kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity, signal transducer activity; INVOLVED IN: signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: PAS domain-containing protein tyrosine kinase family protein (TAIR:AT3G06640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12080112..12083708 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82157.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 735 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGNNSESSL YQVLVEWCQR METSQARLRE DVDDLLLQEE SRTGKESATG LETDTEKEAE VEVEAEAADS WDNPTATWER AVSGFYFADS AYRTLMDSMG 101: HAIHVTSAAS GEITFWSRSA ENLYHWYAEE VVGYRTIDVL VTEEYRNSLT GIRNRVCRGE TWTGQFPFQK KTGELFMALV TKSPVYENGE LVGVVTVSSD 201: ATLFNRMHPL SNEHQQQARS NNRHESNLRK HQWHLPRPQI AAASQVPVVP QYSSAVASNL ASKLLPQRNG DDSFNGNHNS RSRDENVPVV ASTTFEKYGS 301: LADKFLGKLQ RKITGSQGTE DNEPILRNGI NKSACGSGGS SKASNAVTCT AFRDNGNGKP KRAEVRISDV YGNGAEGLIH NGDRFQYIGN LGQSKPPRGL 401: ESGLVSGMRG TKMSDLNGEI EDAWNTRLSV DPLPILGVNS GRQQSPVNQR NNRLVTDSSC EIRWEDLQLG EEVGRGSFAA VHRGVWNGSD VAIKVYFDGD 501: YNAMTLTECK KEINIMKKLR HPNVLLFMGA VCTEEKSAII MEYMPRGSLF KILHNTNQPL DKKRRLRMAL DVARGMNYLH RRNPPIVHRD LKSSNLLVDK 601: NWNVKVGDFG LSKWKNATFL STKSGKGTPQ WMAPEVLRSE PSNEKCDVFS FGVILWELMT TLVPWDRLNS IQVVGVVGFM DRRLDLPEGL NPRIASIIQD 701: CWQTDPAKRP SFEELISQMM SLFRKPGSGA QEEDD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)