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AT4G22920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : non-yellowing 1
Curator
Summary (TAIR10)
Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves.
Computational
Description (TAIR10)
NON-YELLOWING 1 (NYE1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chlorophyll catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:13680DNASU:828391eggNOG:ENOG410IETAeggNOG:ENOG4111UAIEMBL:AL031018EMBL:AL161558EMBL:AY063900
EMBL:AY086912EMBL:AY096504EMBL:AY850161EMBL:CP002687EMBL:DQ437531EnsemblPlants:AT4G22920EnsemblPlants:AT4G22920.1
entrez:828391GeneID:828391Genevisible:O82741GO:GO:0009535GO:GO:0015996Gramene:AT4G22920.1hmmpanther:PTHR31750
hmmpanther:PTHR31750:SF4HOGENOM:HOG000243267InParanoid:O82741IntAct:O82741InterPro:IPR024438KEGG:ath:AT4G22920OMA:WSHSLSN
PaxDb:O82741Pfam:O82741Pfam:PF12638PhylomeDB:O82741PIR:T05123PRO:PR:O82741Proteomes:UP000006548
RefSeq:NP_567673.1STRING:3702.AT4G22920.1TAIR:AT4G22920tair10-symbols:ATNYE1tair10-symbols:NYE1UniGene:At.27150UniProt:O82741
Coordinates (TAIR10) chr4:-:12016776..12017969
Molecular Weight (calculated) 30053.90 Da
IEP (calculated) 8.73
GRAVY (calculated) -0.26
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MCSLSAIMLL PTKLKPAYSD KRSNSSSSSS LFFNNRRSKK KNQSIVPVAR LFGPAIFESS KLKVLFLGVD EKKHPSTLPR TYTLTHSDIT AKLTLAISQS
101: INNSQLQGWA NRLYRDEVVA EWKKVKGKMS LHVHCHISGG HFLLDLFAKF RYFIFCKELP VVLKAFVHGD GNLLNNYPEL QEALVWVYFH SNVNEFNKVE
201: CWGPLWEAVS PDGHKTETLP EARCADECSC CFPTVSSIPW SHSLSNEGVN GYSGTQTEGI ATPNPEKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)