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AT4G22890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PGR5-LIKE A
Curator
Summary (TAIR10)
Encodes PGRL1A, a transmembrane protein present in thylakoids. PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).
Computational
Description (TAIR10)
PGR5-LIKE A; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthetic electron transport in photosystem I, photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:13677eggNOG:ENOG410IK90eggNOG:ENOG4110C1QEMBL:AL031018EMBL:AL161558EMBL:BT000905EMBL:CP002687
EnsemblPlants:AT4G22890EnsemblPlants:AT4G22890.1EnsemblPlants:AT4G22890.2EnsemblPlants:AT4G22890.3entrez:828388GeneID:828388Genevisible:Q8H112
GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009579GO:GO:0009773GO:GO:0015979GO:GO:0016021
GO:GO:0016730GO:GO:0042802hmmpanther:PTHR31032hmmpanther:PTHR31032:SF1HOGENOM:HOG000006357InParanoid:Q8H112IntAct:Q8H112
iPTMnet:Q8H112KEGG:ath:AT4G22890MINT:MINT-8360554OMA:ITYIMELPaxDb:Q8H112Pfam:Q8H112PhylomeDB:Q8H112
PIR:T05120PRIDE:Q8H112PRO:PR:Q8H112ProteinModelPortal:Q8H112Proteomes:UP000006548RefSeq:NP_001078431.1RefSeq:NP_001078432.1
RefSeq:NP_567672.1RefSeq:NP_849422.1RefSeq:NP_849423.1STRING:3702.AT4G22890.1TAIR:AT4G22890tair10-symbols:PGR5-LIKE ATMHMM:TMhelix
UniGene:At.2370UniProt:Q8H112
Coordinates (TAIR10) chr4:+:12007157..12009175
Molecular Weight (calculated) 35723.00 Da
IEP (calculated) 4.92
GRAVY (calculated) -0.02
Length 324 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)