AT4G22850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.838 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SNARE associated Golgi protein family | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SNARE associated Golgi protein family; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G12000.1); Has 1827 Blast hits to 1824 proteins in 531 species: Archae - 7; Bacteria - 902; Metazoa - 120; Fungi - 93; Plants - 292; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11994194..11995941 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33188.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.69 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.40 | ||||||||||||||||||||||||||||
| Length | 296 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTVTEDEKPV LELLVRVEDD DEKGPYVKLS EVLEKGQESE QEKEEEKTDS SRFWFWVKLS LLFAFLAALA VVGYIWIGPL IMDKELIPLI QWEIRTFTHP 101: VCGLLVFASV AIFPTILLPS TPSMWIAGMT FGYGYGFLLI ISAAAVGVSL PYFIGQLFCH KIQGWLERYP DQAAVLRAAG EGNWLHQFLL VTLIRISPFP 201: YILYNYCSVA TRVKYGPYIT GSLLGMVPEV FVAIYTGILV RTLAEASSAE EQGLSVTQVI LNILGFLATV ATTILITKYA KRQLETMKKE DEALLQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)