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AT4G22850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.776
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SNARE associated Golgi protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SNARE associated Golgi protein family; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT4G12000.1); Has 1827 Blast hits to 1824 proteins in 531 species: Archae - 7; Bacteria - 902; Metazoa - 120; Fungi - 93; Plants - 292; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0398eggNOG:ENOG410IJ5ZEMBL:BT004115EMBL:BT004966EMBL:CP002687EnsemblPlants:AT4G22850EnsemblPlants:AT4G22850.1
entrez:828384ExpressionAtlas:Q84JU5GeneID:828384GO:GO:0016021Gramene:AT4G22850.1hmmpanther:PTHR12677hmmpanther:PTHR12677:SF27
HOGENOM:HOG000070846InterPro:IPR015414InterPro:IPR032816ncoils:CoilOMA:WRAIRWWPANTHER:PTHR12677Pfam:PF09335
PhylomeDB:Q84JU5Proteomes:UP000006548RefSeq:NP_194016.2TAIR:AT4G22850TMHMM:TMhelixUniGene:At.32489UniProt:Q84JU5
Coordinates (TAIR10) chr4:+:11994194..11995941
Molecular Weight (calculated) 33188.70 Da
IEP (calculated) 4.69
GRAVY (calculated) 0.40
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MTVTEDEKPV LELLVRVEDD DEKGPYVKLS EVLEKGQESE QEKEEEKTDS SRFWFWVKLS LLFAFLAALA VVGYIWIGPL IMDKELIPLI QWEIRTFTHP
101: VCGLLVFASV AIFPTILLPS TPSMWIAGMT FGYGYGFLLI ISAAAVGVSL PYFIGQLFCH KIQGWLERYP DQAAVLRAAG EGNWLHQFLL VTLIRISPFP
201: YILYNYCSVA TRVKYGPYIT GSLLGMVPEV FVAIYTGILV RTLAEASSAE EQGLSVTQVI LNILGFLATV ATTILITKYA KRQLETMKKE DEALLQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)