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AT4G22790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.847
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G29140.1); Has 7578 Blast hits to 7441 proteins in 1706 species: Archae - 65; Bacteria - 4933; Metazoa - 143; Fungi - 328; Plants - 1275; Viruses - 0; Other Eukaryotes - 834 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AL021635EMBL:AL161558EMBL:BT002796EMBL:CP002687EnsemblPlants:AT4G22790
EnsemblPlants:AT4G22790.1entrez:828378GeneID:828378Genevisible:O49660GO:GO:0005886GO:GO:0006855GO:GO:0015238
GO:GO:0015297GO:GO:0016021GO:GO:0071244GO:GO:1902456Gramene:AT4G22790.1hmmpanther:PTHR11206hmmpanther:PTHR11206:SF93
HOGENOM:HOG000177026IntAct:O49660InterPro:IPR002528KEGG:ath:AT4G22790KO:K03327OMA:ILIHFGQPaxDb:O49660
Pfam:PF01554PhylomeDB:O49660PIR:T04574ProteinModelPortal:O49660Proteomes:UP000006548Reactome:R-ATH-425366RefSeq:NP_194010.1
SMR:O49660STRING:3702.AT4G22790.1TAIR:AT4G22790TIGRfam:TIGR00797TIGRFAMs:TIGR00797TMHMM:TMhelixUniGene:At.32496
UniProt:O49660
Coordinates (TAIR10) chr4:-:11975153..11976628
Molecular Weight (calculated) 53705.20 Da
IEP (calculated) 8.28
GRAVY (calculated) 0.63
Length 491 amino acids
Sequence (TAIR10)
(BLAST)
001: MSETSKSESL DPEVSEGLCS KTLMQSIVHE LKLQMRIGLP LVVMNLLWFG KMTTTSVFLG RQGELNLAGG SLGFSFANVT GFSVLYGISA AMEPICGQAF
101: GAKNFKLLHK TLFMAVLLLL LISVPISFLW LNVHKILTGF GQREDISFIA KKYLLYLLPE LPILSFLCPL KAYLSSQGVT LPIMFTTAAA TSLHIPINIV
201: LSKARGIEGV AMAVWITDFI VVILLTGYVI VVERMKENKW KQGGWLNQSA QDWLTLIKLS GPCCLTVCLE WWCYEILVLL TGRLPNPVQA VSILIIVFNF
301: DYLLYAVMLS LGTCVATRVS NELGANNPKG AYRAAYTTLI VGIISGCIGA LVMIAFRGFW GSLYTHHDQL ILNGVKKMML IMAVIEVVNF PLMVCGEIVR
401: GTAKPSLGMY ANLSGFYLLA LPLGATLAFK AKQGLQGFLI GLFVGISLCL SILLIFIARI DWEKEAGKAQ ILTCNTEDEQ TSQGSGQDSH S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)