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AT4G22720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Actin-like ATPase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Actin-like ATPase superfamily protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M22, glycoprotease (InterPro:IPR000905), Peptidase M22, glycoprotease, subgroup (InterPro:IPR017861); BEST Arabidopsis thaliana protein match is: glycoprotease 1 (TAIR:AT2G45270.1); Has 9582 Blast hits to 9549 proteins in 2910 species: Archae - 279; Bacteria - 5450; Metazoa - 250; Fungi - 284; Plants - 210; Viruses - 0; Other Eukaryotes - 3109 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G22720-MONOMERBioCyc:ARA:GQT-482-MONOMEReggNOG:COG0533eggNOG:KOG2708
EMBL:AL021635EMBL:AL161557EMBL:AY050841EMBL:AY079379
EMBL:AY088084EMBL:CP002687EnsemblPlants:AT4G22720EnsemblPlants:AT4G22720.1
EnsemblPlants:AT4G22720.2entrez:828368GeneID:828368GO:GO:0005829
Gramene:AT4G22720.1Gramene:AT4G22720.2hmmpanther:PTHR11735hmmpanther:PTHR11735:SF14
HOGENOM:HOG000109569IntAct:O49653InterPro:IPR000905InterPro:IPR017861
KEGG:ath:AT4G22720KO:K01409merops:M22.003OMA:ERYCIDN
Pfam:PF00814PhylomeDB:O49653PIR:T04567PRINTS:PR00789
Proteomes:UP000006548RefSeq:NP_194003.1RefSeq:NP_974593.1SMR:O49653
STRING:3702.AT4G22720.1SUPFAM:SSF53067TAIR:AT4G22720TIGRfam:TIGR00329
TIGRFAMs:TIGR00329UniGene:At.1865UniProt:O49653
Coordinates (TAIR10) chr4:+:11937467..11938717
Molecular Weight (calculated) 38769.90 Da
IEP (calculated) 5.81
GRAVY (calculated) -0.05
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKKMIAIGF EGSANKIGVG IVTLDGTILA NPRHTYITPP GHGFLPRETA HHHLDHVLPL VKSALETSQV TPEEIDCICY TKGPGMGAPL QVSAIVVRVL
101: SQLWKKPIVA VNHCVAHIEM GRVVTGADDP VVLYVSGGNT QVIAYSEGRY RIFGETIDIA VGNCLDRFAR VLKLSNDPSP GYNIEQLAKK GENFIDLPYA
201: VKGMDVSFSG ILSYIETTAE EKLKNNECTP ADLCYSLQET VFAMLVEITE RAMAHCDKKD VLIVGGVGCN ERLQEMMRTM CSERDGKLFA TDDRYCIDNG
301: AMIAYTGLLA FVNGIETPIE DSTFTQRFRT DEVHAVWREK EAVLLGDKKV AAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)