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AT4G22540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.591
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : OSBP(oxysterol binding protein)-related protein 2A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
OSBP(oxysterol binding protein)-related protein 2A (ORP2A); CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 2B (TAIR:AT4G12460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:13638eggNOG:ENOG410XP9EeggNOG:KOG1737EMBL:AK222178EMBL:AK229811EMBL:AL033545EMBL:AL161557
EMBL:AY052361EMBL:BT001093EMBL:CP002687EnsemblPlants:AT4G22540EnsemblPlants:AT4G22540.1entrez:828349Gene3D:2.30.29.30
GeneID:828349Genevisible:Q940Y1GO:GO:0006869GO:GO:0008289hmmpanther:PTHR10972hmmpanther:PTHR10972:SF88HOGENOM:HOG000231234
InParanoid:Q940Y1IntAct:Q940Y1InterPro:IPR000648InterPro:IPR001849InterPro:IPR011993KEGG:ath:AT4G22540ncoils:Coil
OMA:RAREMHPPANTHER:PTHR10972PaxDb:Q940Y1Pfam:PF01237Pfam:PF15413Pfam:Q940Y1Pfscan:PS50003
PhylomeDB:Q940Y1PIR:T05448PRIDE:Q940Y1PRO:PR:Q940Y1PROSITE:PS50003ProteinModelPortal:Q940Y1Proteomes:UP000006548
RefSeq:NP_001031698.1RefSeq:NP_001190800.1RefSeq:NP_567662.1RefSeq:NP_974592.1SMART:SM00233SMR:Q940Y1STRING:3702.AT4G22540.1
SUPFAM:0051579SUPFAM:SSF50729TAIR:AT4G22540tair10-symbols:ORP2AUniGene:At.23326UniProt:Q940Y1
Coordinates (TAIR10) chr4:-:11860969..11866108
Molecular Weight (calculated) 82046.60 Da
IEP (calculated) 7.05
GRAVY (calculated) -0.65
Length 721 amino acids
Sequence (TAIR10)
(BLAST)
001: MRVKELHPLC CITLESPHGI NSQSPEEPVT TALTRSRSLP AKSLTGGSES ETVAGILYKW TNFGKGWRSR WFLLRNGILS YSKIRRPENL NLLSPDDDVR
101: LIGDISGERL SRMDSCSGRR KQQKTVGIVH LKVSSFRESK SDDRKFYIFT ATKTLHLRTD SITDRAAWLQ ALASTKCIFP LRSLNGDFSF IPPKDLSIST
201: ERLKKRLHEE GMNENLVKEC EQIMLSEFSE MHGQVKLLHE ERTNLLDALR QLEAANLEVG ASGKHEFSSL GRGKYSECST TASSDGKQEF EDVSEEDEPS
301: FHDTKEFFNE PNIGSESNLA ISGHTDIKRR TKLPDPAEKE KGVSLWSMIK DNVGKDLTRV CLPVYFNEPI SSLQKCFEDL EYSYLLDRAY EHGKSGNGLL
401: RALNVAAFAV SGYASTEGRH CKPFNPLLGE TYEADFPEKG IRFFSEKVSH HPTVIACHCE GKGWKFWGDT NLRSKFWGRS IQVEPVGVLT LEFDDGEVFQ
501: WSKVTSTIYN IILGKLYCDH HGVMQIRGNR QYSCTLKFKE QSILERNPHQ VNGFVEDVAG QKAATIFGKW DDSLYYVAGD GINKSKVSDP ASNASLLWKR
601: TKPPPNVTRY NLTSFAITLN ELTPGLQEIL PPTDSRLRPD QRHLENGEYE KANLEKQRLE RRQRMSRQLQ ESGWRPRWFE RQGESDTFKY TGGYWEARGH
701: RNWDDCPDIF GEFTEELADA A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)