suba logo
AT4G22430.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28114413 (2017): plasma membrane
  • PMID:23796795 (2013): plasma membrane
  • PMID:23796795 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G26010.1); Has 117 Blast hits to 117 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AL033545EMBL:AL161557EMBL:CP002687EMBL:DQ446861EMBL:DQ653215EnsemblPlants:AT4G22430EnsemblPlants:AT4G22430.1
entrez:828338GeneID:828338Genevisible:Q1PE57Gramene:AT4G22430.1hmmpanther:PTHR31264hmmpanther:PTHR31264:SF14HOGENOM:HOG000112512
InParanoid:Q1PE57InterPro:IPR001810KEGG:ath:AT4G22430PaxDb:Q1PE57Pfam:PF00646Pfam:Q1PE57PhylomeDB:Q1PE57
PIR:H85256PRO:PR:Q1PE57ProteinModelPortal:Q1PE57Proteomes:UP000006548RefSeq:NP_193974.2SMR:Q1PE57SUPFAM:SSF81383
TAIR:AT4G22430UniGene:At.54475UniProt:Q1PE57
Coordinates (TAIR10) chr4:+:11827622..11828905
Molecular Weight (calculated) 49365.80 Da
IEP (calculated) 7.89
GRAVY (calculated) -0.10
Length 427 amino acids
Sequence (TAIR10)
(BLAST)
001: MFVSLVTLSI TQFPMEKPNN TITDVLEGIV TEILVRLPLR SISRFKSVSQ TWKSAIESVY FRRLFVSLHQ NTSSSWSLLL RKEEFIDFHG CGTWGLPKSL
101: GSYIQCMELD GKFEYMWFSG SNGLILMHRK LGTWKNYVGN PVLQQWVEIP ACPGSYTFFC GVVTGVDEVG VVLSFKVVKS GNMFLNKGEM YMPLYVYSSE
201: TGFWIHKEVV CPVRLPNFYD PISLNGTLYF SQRGDSYNRR PGLMVLDFYG KPKDCHFIPL PDHALNRNKT CLATSSGFVM YIKTLAQPGG NLLKVWRLID
301: DSAWQLMWEV SIPFIGCYAP MSMHPFDRNI VYLWSHDNCY LMSFNLQTQN YKIFGDESKH HDCYINHRTC EKHMYKISRP YSVSEYEGPI ILQQWVLSRW
401: MQSVPRPPEV EMIDTTSLLS LVVKNEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)