suba logo
AT4G22300.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.986
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : carboxylesterases
Curator
Summary (TAIR10)
encodes a carboxylesterase that inhibits AvrBsT-triggered phenotypes in Arabidopsis
Computational
Description (TAIR10)
SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1 (SOBER1); FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: defense response, incompatible interaction, regulation of plant-type hypersensitive response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase/carboxylesterase (InterPro:IPR003140); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G22305.1); Has 4896 Blast hits to 2727 proteins in 833 species: Archae - 28; Bacteria - 2331; Metazoa - 701; Fungi - 503; Plants - 344; Viruses - 0; Other Eukaryotes - 989 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G22300-MONOMEREC:3.1.1.-eggNOG:COG0400eggNOG:KOG2112EMBL:AK117563EMBL:AL021712EMBL:CP002687
EMBL:EF100726EnsemblPlants:AT4G22300EnsemblPlants:AT4G22300.1entrez:828325ESTHER:arath-AT4g22300.1ESTHER:arath-AT4g22300.2Gene3D:3.40.50.1820
GeneID:828325Genevisible:Q8GYK2GO:GO:0006631GO:GO:0016787Gramene:AT4G22300.1hmmpanther:PTHR10655hmmpanther:PTHR10655:SF20
HOGENOM:HOG000260139InParanoid:Q8GYK2InterPro:IPR003140InterPro:IPR029058KEGG:ath:AT4G22300OMA:PEFRLAKPaxDb:Q8GYK2
Pfam:PF02230PRIDE:Q8GYK2PRO:PR:Q8GYK2ProteinModelPortal:Q8GYK2Proteomes:UP000006548RefSeq:NP_193961.3SMR:Q8GYK2
STRING:3702.AT4G22300.1SUPFAM:SSF53474TAIR:AT4G22300tair10-symbols:SOBER1TMHMM:TMhelixUniGene:At.32550UniGene:At.75299
UniProt:Q8GYK2
Coordinates (TAIR10) chr4:-:11787560..11789252
Molecular Weight (calculated) 28704.40 Da
IEP (calculated) 8.46
GRAVY (calculated) -0.02
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MRTSRLKKPI VLLTIALLSS VFFFAFFFLN KSDVSSTSAL RNRDSMARTF ILWLHGLGDS GPANEPIKTL FRSQEFRNTK WLFPSAPPNP VSCNYGAVMP
101: SWFDIPELPL TAGSPKDESS LLKAVKNVHA IIDKEIAGGI NPENVYICGF SQGGALTLAS VLLYPKTIGG GAVFSGWIPF NSSITNQFTE DAKKTPILWS
201: HGIDDKTVLF EAGQAALPFL QQAGVTCEFK AYPGLGHSIS NEELQYLESW LKQRMQSSSS SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)