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AT4G22110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : GroES-like zinc-binding dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GroES-like zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: root, synergid; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT1G22430.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G22110-MONOMERBioCyc:ARA:GQT-1879-MONOMEREC:1.1.1.1eggNOG:COG1062
eggNOG:KOG0022EMBL:AL022140EMBL:AL161556EMBL:AY084215
EMBL:BT026454EMBL:CP002687EnsemblPlants:AT4G22110EnsemblPlants:AT4G22110.1
EnsemblPlants:AT4G22110.2entrez:828300Gene3D:3.40.50.720Gene3D:3.90.180.10
GeneID:828300Genevisible:Q0V7W6GO:GO:0004022GO:GO:0005737
GO:GO:0008270Gramene:AT4G22110.1Gramene:AT4G22110.2gramene_pathway:1.1.1.1
gramene_pathway:1.1.1.22gramene_pathway:ETOH-ACETYLCOA-ANA-PWYgramene_pathway:PWY-3801gramene_pathway:PWY-3821
gramene_pathway:PWY-4821gramene_pathway:PWY-5486gramene_pathway:PWY-6333gramene_pathway:PWY66-21
hmmpanther:PTHR11695hmmpanther:PTHR11695:SF492HOGENOM:HOG000294674InParanoid:Q0V7W6
InterPro:IPR002085InterPro:IPR002328InterPro:IPR011032InterPro:IPR013149
InterPro:IPR013154InterPro:IPR016040KEGG:ath:AT4G22110KO:K00121
OMA:HELKFEEPANTHER:PTHR11695PaxDb:Q0V7W6Pfam:PF00107
Pfam:PF08240Pfam:Q0V7W6PhylomeDB:Q0V7W6PIR:T49118
PRIDE:Q0V7W6PRO:PR:Q0V7W6PROSITE:PS00059ProteinModelPortal:Q0V7W6
Proteomes:UP000006548RefSeq:NP_567645.1RefSeq:NP_974589.1scanprosite:PS00059
SMR:Q0V7W6STRING:3702.AT4G22110.1SUPFAM:SSF50129SUPFAM:SSF51735
TAIR:AT4G22110UniGene:At.32567UniProt:Q0V7W6
Coordinates (TAIR10) chr4:-:11711422..11713946
Molecular Weight (calculated) 42520.40 Da
IEP (calculated) 7.12
GRAVY (calculated) 0.03
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKTSMFSIH EGKPIRCKAA VSRKPGEALV IEEIHVDPPQ AYEVRIKIIC TSLCHTDVSF SKIDSGPLAR FPRILGHEAV GVIESIGEHV NGFQQGDVVL
101: PVFHPHCEEC RDCKSSKSNW CARFADDFLS NTRRYGMTSR FKDSFGEDIY HFLFVSSFSE YTVVDIAHLV KISPDIPVDK AALLSCGVST GIGAAWKVAN
201: VEKGSTVAVF GLGAVGLAVG EGARLRGAGK IIGVDLNPEK FELGKKFGFT DFINSTLCGE NKISEVIKEM TGGGVDYSFE CVGLPSLLTE AFSSTRTGSG
301: KTVVLGIDKH LTPVSLGSFD LLRGRHVCGS LFGGLKPKLD IPILVDHYLK KELNLDSFIT HELKFEEINK AFDLLVQGKS LRCILWMNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)