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AT4G21960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24393051 (2015): unclear
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Encodes AT4g21960 (AT4g21960/T8O5_170).
Computational
Description (TAIR10)
PRXR1; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G37130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G21960-MONOMERBioGrid:13574EC:1.11.1.7eggNOG:ENOG410IHCNeggNOG:ENOG4111GTWEMBL:AF083767EMBL:AF325015
EMBL:AF428379EMBL:AL021890EMBL:AL022140EMBL:AL161556EMBL:AY056809EMBL:AY058071EMBL:AY059810
EMBL:AY132009EMBL:CP002687EMBL:X98189EMBL:X98313EMBL:Z17792EnsemblPlants:AT4G21960EnsemblPlants:AT4G21960.1
entrez:828285GeneID:828285Genevisible:Q9SB81GO:GO:0004601GO:GO:0005576GO:GO:0006979GO:GO:0009505
GO:GO:0009664GO:GO:0020037GO:GO:0042744GO:GO:0046872GO:GO:0048511GO:GO:0098869Gramene:AT4G21960.1
hmmpanther:PTHR31235hmmpanther:PTHR31235:SF69HOGENOM:HOG000237556InParanoid:Q9SB81IntAct:Q9SB81InterPro:IPR000823InterPro:IPR002016
InterPro:IPR010255KEGG:00940+1.11.1.7KEGG:ath:AT4G21960KO:K00430OMA:DRGTPMVPaxDb:Q9SB81PeroxiBase:208
Pfam:PF00141Pfam:Q9SB81Pfscan:PS50873PhylomeDB:Q9SB81PIR:T05478PRIDE:Q9SB81PRINTS:PR00458
PRINTS:PR00461PRO:PR:Q9SB81PROSITE:PS50873ProteinModelPortal:Q9SB81Proteomes:UP000006548RefSeq:NP_567641.1SMR:Q9SB81
STRING:3702.AT4G21960.1SUPFAM:SSF48113TAIR:AT4G21960tair10-symbols:PRXR1UniGene:At.21298UniGene:At.23508UniGene:At.71691
UniGene:At.75564UniGene:At.75585UniProt:Q9SB81
Coordinates (TAIR10) chr4:-:11646613..11648312
Molecular Weight (calculated) 37297.00 Da
IEP (calculated) 7.78
GRAVY (calculated) -0.40
Length 330 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGKGVMMVA ILCLWALSAT SEAVTEAEPG LMMNFYKDTC PQAEDIVREQ VKLLYKRHKN TAFSWLRNIF HDCAVESCDA SLLLDSTRRE LGEKEHDRSF
101: GLRNFRYIEE IKEALERECP GVVSCSDILV LSAREGIEAV GGPYIPLKTG RRDGLKSRTD MLESYLPDHN ESISVVLEKF KSIGIDTPGL VALLGSHSVG
201: RTHCVKLVHR LYPEVDPSLN PDHVPHMLHK CPDSIPDPKA VQYVRNDRGT PMVLDNNYYR NILDNKGLLL VDHQLAHDKR TRPIVKKMAK DQAYFFKEFT
301: RAIQILSENN PLTGSKGEIR KQCNLANKNH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)