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AT4G21870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.974
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G53540.1); Has 2331 Blast hits to 2331 proteins in 523 species: Archae - 47; Bacteria - 802; Metazoa - 2; Fungi - 44; Plants - 1239; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0071eggNOG:KOG0710EMBL:AK117785EMBL:AL021890EMBL:AL161556EMBL:AY086272EMBL:BT025602
EMBL:CP002687EnsemblPlants:AT4G21870EnsemblPlants:AT4G21870.1entrez:828276Gene3D:2.60.40.790GeneID:828276Genevisible:O49710
GO:GO:0005737Gramene:AT4G21870.1hmmpanther:PTHR11527hmmpanther:PTHR11527:SF97HOGENOM:HOG000251751InParanoid:O49710InterPro:IPR002068
InterPro:IPR008978InterPro:IPR031107KEGG:ath:AT4G21870KO:K13993OMA:FKRKFRLPANTHER:PTHR11527PaxDb:O49710
Pfam:O49710Pfam:PF00011Pfscan:PS01031PhylomeDB:O49710PIR:T05469PRIDE:O49710PRO:PR:O49710
PROSITE:PS01031ProteinModelPortal:O49710Proteomes:UP000006548RefSeq:NP_193918.1SMR:O49710STRING:3702.AT4G21870.1SUPFAM:SSF49764
TAIR:AT4G21870UniGene:At.32592UniProt:O49710
Coordinates (TAIR10) chr4:-:11603756..11604285
Molecular Weight (calculated) 15387.50 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.33
Length 134 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFQTIQVMP WEYVLASQSL NNYQENHVRW SQSPDSHTFS VDLPGLRKEE IKVEIEDSIY LIIRTEATPM SPPDQPLKTF KRKFRLPESI DMIGISAGYE
101: DGVLTVIVPK RIMTRRLIDP SDVPESLQLL ARAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)