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AT4G21820.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : binding;calmodulin binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
binding;calmodulin binding; FUNCTIONS IN: calmodulin binding, binding; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Armadillo (InterPro:IPR000225), Calponin-like actin-binding (InterPro:IPR001715), Armadillo-type fold (InterPro:IPR016024), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin 2 (TAIR:AT5G43900.1); Has 3955 Blast hits to 2210 proteins in 242 species: Archae - 0; Bacteria - 4; Metazoa - 3047; Fungi - 265; Plants - 324; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSAReggNOG:KOG0165EMBL:CP002687EnsemblPlants:AT4G21820
EnsemblPlants:AT4G21820.1entrez:828270Gene3D:1.10.418.10Gene3D:1.25.10.10
GeneID:828270Gramene:AT4G21820.1hmmpanther:PTHR11915InParanoid:F4JKA2
InterPro:IPR000048InterPro:IPR000225InterPro:IPR001715InterPro:IPR011989
InterPro:IPR016024InterPro:IPR027417iPTMnet:F4JKA2KEGG:ath:AT4G21820
KO:K16743ncoils:CoilOMA:RIFMCYNPaxDb:F4JKA2
Pfam:PF00307Pfam:PF00612Pfscan:PS50021Pfscan:PS50096
Pfscan:PS50176PRIDE:F4JKA2PROSITE:PS50021PROSITE:PS50096
PROSITE:PS50176ProteinModelPortal:F4JKA2Proteomes:UP000006548RefSeq:NP_193913.4
SMART:SM00015SMART:SM00185SMR:F4JKA2STRING:3702.AT4G21820.1
SUPFAM:SSF47576SUPFAM:SSF48371SUPFAM:SSF52540TAIR:AT4G21820
UniGene:At.32597UniProt:F4JKA2
Coordinates (TAIR10) chr4:+:11577558..11583871
Molecular Weight (calculated) 142821.00 Da
IEP (calculated) 10.36
GRAVY (calculated) -0.32
Length 1255 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDENEPPCAS PAPPRNPASS LLSDISNFKT PRRTSVVNSN ISKSPYPHFF TASKQTPKSS SSNFRRPSMV HSYASRSKVS TSSRRLKAFE LQQSQSSRKA
0101: ELTKEKNLRS LAKSLTVWLN FLFENPENCG CDPFENESGV GNLGKGKRDS GEALGNSKSV GVDTMWRSPK RLRNLGWCGE KKRSEIDSSL TGSKYSTLRE
0201: SLRDVCSLDD LKQRMQFHLS LGSCKEIFDV MTRVSKNIDE GRIKMKPQCP LVTDFGMKEK AIKALMSYNQ VWLRLGLYII FGGDSFLSDS EVNSDQEMAF
0301: LKMVISKQFF SHDGLARSYV YNKMVEGLYR PGYYEALGNV ILKRILLLVL VIDRAKSQSC LSLKYGIDGI DGGSPLMFSE KSSIKSSHQL ICELLSSDVM
0401: HGEGNLLAHL VIIGYKIPYQ QSPLVEYNFR VRELFADLQD GVRLCRAIQL LLHDPSILTK MVVPSDNRKK NLANCRIALQ YLKDAGVSLK DDEGMMITGE
0501: DVADGDRELT ISLLWNIFVH LQLPLLINGR LLTEEIYKVQ GVEQNNQITM STPLEMLLNW IQDPGGQEGP QSVMSNTDYH DAVQNFILSQ KLTALLGSFP
0601: EIGDLLEHNA VVSNQSVIIL LAFLSSKLIV KENLLDFTLA GYLTNSVFSQ EQLNFHKLLC SSCQVQEKRY SRIRISCSSS EAVTIEEPDR ENGEDATKRF
0701: QAIKAWWQDM ANQNQISVGK ANSHTLQGSL SRKCTTDSQR AYLLLAEIAA VIIQSNIRGL HARRKFRNKM RAICFLQAAV RTWLSVKNIQ VVEKFNVEEV
0801: TLHLSERSAN LKPVARYVKF IVDRSRFIKL RKSVSVIQKA VRRHQSNLHH ELKAALRIQL AWRSYKEKVI SSITIQSYVR GWITRRMNRT YKFSSILIQR
0901: YCRGWLARRK FCLQREATIS IQSAIRKFNC MMSFHRCKHA ATQVQRLVRG QIVRSRLQGA STLYSKLDEG VSRLPQHSFG MTKMLHSVIK VQRWWREFLH
1001: SKNMRIKSAV LIQSHIRGLF ARRKTSVERH NIVMIQSHWR GYLTRKASKA QVLDLRVRMQ TSAANIDDKK RLINKLLSAL SELLSMKNVH NILHICETLE
1101: SATKYSDKCC EELVAAGAIE KLLTLIRSAS RSIPDQQVSK HALSTLGHLA RYPQMADELI NTKGSIQTIF WELLRNKEEA YFIASDVLKK ICSSHKGVEA
1201: VRKLPALVKR LHVLVEELTR KANIEKRNVK GQTGKEKSER RLKEAIELVK LITRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)