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AT4G21710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA-directed RNA polymerase family protein
Curator
Summary (TAIR10)
Encodes the unique second-largest subunit of DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB2 and a homolog of the E. coli RNA polymerase beta subunit.
Computational
Description (TAIR10)
NRPB2; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 37546 Blast hits to 27868 proteins in 9192 species: Archae - 496; Bacteria - 17572; Metazoa - 623; Fungi - 7193; Plants - 3397; Viruses - 232; Other Eukaryotes - 8033 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G21710-MONOMERBioGrid:13548EC:2.7.7.6eggNOG:COG0085eggNOG:KOG0214EMBL:AL035527EMBL:AL161555
EMBL:CP002687EMBL:Z19120EMBL:Z19121EnsemblPlants:AT4G21710EnsemblPlants:AT4G21710.1entrez:828259Gene3D:2.40.270.10
Gene3D:2.40.50.150Gene3D:3.90.1110.10GeneID:828259Genevisible:P38420GO:GO:0003677GO:GO:0003899GO:GO:0005665
GO:GO:0005829GO:GO:0006366GO:GO:0009506GO:GO:0016591GO:GO:0032549GO:GO:0046872Gramene:AT4G21710.1
hmmpanther:PTHR20856hmmpanther:PTHR20856:SF7HOGENOM:HOG000218612InParanoid:P38420InterPro:IPR007120InterPro:IPR007121InterPro:IPR007641
InterPro:IPR007642InterPro:IPR007644InterPro:IPR007645InterPro:IPR007646InterPro:IPR007647InterPro:IPR014724InterPro:IPR015712
KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6KEGG:ath:AT4G21710KO:K03010OMA:RTQPHFEPANTHER:PTHR20856PaxDb:P38420
Pfam:P38420Pfam:PF00562Pfam:PF04560Pfam:PF04561Pfam:PF04563Pfam:PF04565Pfam:PF04566
Pfam:PF04567PhylomeDB:P38420PIR:T05846PRIDE:P38420PRO:PR:P38420PROSITE:PS01166ProteinModelPortal:P38420
Proteomes:UP000006548Reactome:R-ATH-112382Reactome:R-ATH-113418Reactome:R-ATH-674695Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210
Reactome:R-ATH-72086Reactome:R-ATH-72163Reactome:R-ATH-72165Reactome:R-ATH-72203Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953
Reactome:R-ATH-76042Reactome:R-ATH-77075RefSeq:NP_193902.1scanprosite:PS01166STRING:3702.AT4G21710.1SUPFAM:SSF64484TAIR:AT4G21710
tair10-symbols:EMB1989tair10-symbols:NRPB2tair10-symbols:RPB2UniGene:At.112UniProt:P38420
Coordinates (TAIR10) chr4:-:11535684..11542200
Molecular Weight (calculated) 135027.00 Da
IEP (calculated) 7.86
GRAVY (calculated) -0.41
Length 1188 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEYNEYEPEP QYVEDDDDEE ITQEDAWAVI SAYFEEKGLV RQQLDSFDEF IQNTMQEIVD ESADIEIRPE SQHNPGHQSD FAETIYKISF GQIYLSKPMM
0101: TESDGETATL FPKAARLRNL TYSAPLYVDV TKRVIKKGHD GEEVTETQDF TKVFIGKVPI MLRSSYCTLF QNSEKDLTEL GECPYDQGGY FIINGSEKVL
0201: IAQEKMSTNH VYVFKKRQPN KYAYVGEVRS MAENQNRPPS TMFVRMLARA SAKGGSSGQY IRCTLPYIRT EIPIIIVFRA LGFVADKDIL EHICYDFADT
0301: QMMELLRPSL EEAFVIQNQL VALDYIGKRG ATVGVTKEKR IKYARDILQK EMLPHVGIGE HCETKKAYYF GYIIHRLLLC ALGRRPEDDR DHYGNKRLDL
0401: AGPLLGGLFR MLFRKLTRDV RSYVQKCVDN GKEVNLQFAI KAKTITSGLK YSLATGNWGQ ANAAGTRAGV SQVLNRLTYA STLSHLRRLN SPIGREGKLA
0501: KPRQLHNSQW GMMCPAETPE GQACGLVKNL ALMVYITVGS AAYPILEFLE EWGTENFEEI SPSVIPQATK IFVNGMWVGV HRDPDMLVKT LRRLRRRVDV
0601: NTEVGVVRDI RLKELRIYTD YGRCSRPLFI VDNQKLLIKK RDIYALQQRE SAEEDGWHHL VAKGFIEYID TEEEETTMIS MTISDLVQAR LRPEEAYTEN
0701: YTHCEIHPSL ILGVCASIIP FPDHNQSPRN TYQSAMGKQA MGIYVTNYQF RMDTLAYVLY YPQKPLVTTR AMEHLHFRQL PAGINAIVAI SCYSGYNQED
0801: SVIMNQSSID RGFFRSLFFR SYRDEEKKMG TLVKEDFGRP DRGSTMGMRH GSYDKLDDDG LAPPGTRVSG EDVIIGKTTP ISQDEAQGQS SRYTRRDHSI
0901: SLRHSETGMV DQVLLTTNAD GLRFVKVRVR SVRIPQIGDK FSSRHGQKGT VGMTYTQEDM PWTIEGVTPD IIVNPHAIPS RMTIGQLIEC IMGKVAAHMG
1001: KEGDATPFTD VTVDNISKAL HKCGYQMRGF ERMYNGHTGR PLTAMIFLGP TYYQRLKHMV DDKIHSRGRG PVQILTRQPA EGRSRDGGLR FGEMERDCMI
1101: AHGAAHFLKE RLFDQSDAYR VHVCEVCGLI AIANLKKNSF ECRGCKNKTD IVQVYIPYAC KLLFQELMSM AIAPRMLTKH LKSAKGRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)