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AT4G21705.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:13547eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL035527EMBL:BT003959EMBL:BT005061EMBL:CP002687
EnsemblPlants:AT4G21705EnsemblPlants:AT4G21705.1entrez:828258Gene3D:1.25.40.10GeneID:828258GO:GO:0005739Gramene:AT4G21705.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF762HOGENOM:HOG000242423InParanoid:Q84JR3IntAct:Q84JR3InterPro:IPR002885InterPro:IPR011990
KEGG:ath:AT4G21705OMA:STSWAIVPaxDb:Q84JR3Pfam:PF01535Pfam:PF13041Pfam:Q84JR3Pfscan:PS51375
PhylomeDB:Q84JR3PRIDE:Q84JR3PRO:PR:Q84JR3PROSITE:PS51375ProteinModelPortal:Q84JR3Proteomes:UP000006548RefSeq:NP_680735.1
SMR:Q84JR3STRING:3702.AT4G21705.1SUPFAM:SSF48452TAIR:AT4G21705TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.45334
UniProt:Q84JR3
Coordinates (TAIR10) chr4:-:11533257..11534817
Molecular Weight (calculated) 56580.20 Da
IEP (calculated) 7.85
GRAVY (calculated) -0.40
Length 492 amino acids
Sequence (TAIR10)
(BLAST)
001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)