AT4G21680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NITRATE TRANSPORTER 1.8 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a nitrate transporter (NRT1.8). Functions in nitrate removal from the xylem sap. Mediates cadmium tolerance. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NITRATE TRANSPORTER 1.8 (NRT1.8); FUNCTIONS IN: transporter activity, nitrate transmembrane transporter activity; INVOLVED IN: response to cadmium ion, oligopeptide transport, response to nitrate; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1.5 (TAIR:AT1G32450.1); Has 7448 Blast hits to 7020 proteins in 1418 species: Archae - 0; Bacteria - 3502; Metazoa - 786; Fungi - 405; Plants - 2210; Viruses - 0; Other Eukaryotes - 545 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:11517540..11519576 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65511.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 589 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDQKVRQFEV CTQDGSVDRH GNPAIRANTG KWLTAILILV NQGLATLAFF GVGVNLVLFL TRVMGQDNAE AANNVSKWTG TVYIFSLLGA FLSDSYWGRY 101: KTCAIFQASF VAGLMMLSLS TGALLLEPSG CGVEDSPCKP HSTFKTVLFY LSVYLIALGY GGYQPNIATF GADQFDAEDS VEGHSKIAFF SYFYLALNLG 201: SLFSNTVLGY FEDQGEWPLG FWASAGSAFA GLVLFLIGTP KYRHFTPRES PWSRFCQVLV AATRKAKIDV HHEELNLYDS ETQYTGDKKI LHTKGFRFLD 301: RAAIVTPDDE AEKVESGSKY DPWRLCSVTQ VEEVKCVLRL LPIWLCTILY SVVFTQMASL FVVQGAAMKT NIKNFRIPAS SMSSFDILSV AFFIFAYRRF 401: LDPLFARLNK TERNKGLTEL QRMGIGLVIA IMAMISAGIV EIHRLKNKEP ESATSISSSS TLSIFWQVPQ YMLIGASEVF MYVGQLEFFN SQAPTGLKSF 501: ASALCMASIS LGNYVSSLLV SIVMKISTTD DVHGWIPENL NKGHLERFYF LLAGLTAADF VVYLICAKWY KYIKSEASFS ESVTEEEEV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)