AT4G21610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : lsd one like 2 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Contains the same novel zinc finger motif with LSD1, a negative regulator of cell death and defense response. Due to differential splicing, it encodes two different proteins, one of which contains an additional, putative DNA binding motif. Northern analysis demonstrated that LOL2 transcripts containing the additional DNA binding motif are predominantly upregulated after treatment with both virulent and avirulent Pseudomonas syringae pv maculicola strains. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
lsd one like 2 (LOL2); CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735); BEST Arabidopsis thaliana protein match is: lsd one like 1 (TAIR:AT1G32540.1); Has 291 Blast hits to 191 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 255; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11489069..11490300 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 17249.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.04 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||||||||||
| Length | 155 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEIQQQTQK EEQKHREEEE EEEEGPPPGW ESAVLPPPIV TITAAVNPNP TTVEIPEKAQ MVCGSCRRLL SYLRGSKHVK CSSCQTVNLV LEANQVGQVN 101: CNNCKLLLMY PYGAPAVRCS SCNSVTDISE NNKRPPWSEQ QGPLKSLSSL RRAEN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)