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AT4G21580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : oxidoreductase, zinc-binding dehydrogenase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Quinone oxidoreductase putative, PIG3 (InterPro:IPR014189), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding alcohol dehydrogenase family protein (TAIR:AT5G61510.1); Has 49097 Blast hits to 48922 proteins in 2912 species: Archae - 689; Bacteria - 31322; Metazoa - 2136; Fungi - 4353; Plants - 1878; Viruses - 0; Other Eukaryotes - 8719 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G21580-MONOMEReggNOG:COG0604eggNOG:KOG1198EMBL:AF411784EMBL:AL022603EMBL:AL035527EMBL:AL161555
EMBL:AY088237EMBL:AY124814EMBL:CP002687EnsemblPlants:AT4G21580EnsemblPlants:AT4G21580.1entrez:828243ExpressionAtlas:O65423
Gene3D:3.40.50.720Gene3D:3.90.180.10GeneID:828243GO:GO:0005829GO:GO:0008270GO:GO:0016491Gramene:AT4G21580.1
hmmpanther:PTHR11695hmmpanther:PTHR11695:SF610HOGENOM:HOG000294672InterPro:IPR002085InterPro:IPR011032InterPro:IPR013149InterPro:IPR013154
InterPro:IPR014189InterPro:IPR016040InterPro:IPR020843KEGG:00231+1.-.-.-KEGG:00592+1.-.-.-KEGG:00633+1.-.-.-KEGG:00780+1.-.-.-
KEGG:00860+1.-.-.-KEGG:00950+1.-.-.-KEGG:00981+1.-.-.-OMA:GVREQVWPANTHER:PTHR11695Pfam:PF00107Pfam:PF08240
PhylomeDB:O65423PIR:T05166Proteomes:UP000006548RefSeq:NP_193889.1SMART:SM00829SMR:O65423STRING:3702.AT4G21580.1
SUPFAM:SSF50129SUPFAM:SSF51735TAIR:AT4G21580TIGRfam:TIGR02824TIGRFAMs:TIGR02824UniGene:At.2271UniProt:O65423
Coordinates (TAIR10) chr4:+:11475822..11477514
Molecular Weight (calculated) 34467.00 Da
IEP (calculated) 6.90
GRAVY (calculated) 0.15
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MKAIVISEPG KPEVLQLRDV ADPEVKDDEV LIRVLATALN RADTLQRLGL YNPPPGSSPY LGLECSGTIE SVGKGVSRWK VGDQVCALLS GGGYAEKVSV
101: PAGQIFPIPA GISLKDAAAF PEVACTVWST VFMMGRLSVG ESFLIHGGSS GIGTFAIQIA KHLGVRVFVT AGSDEKLAAC KELGADVCIN YKTEDFVAKV
201: KAETDGKGVD VILDCIGAPY LQKNLDSLNF DGRLCIIGLM GGANAEIKLS SLLPKRLTVL GAALRPRSPE NKAVVVREVE KNVWPAIEAG KVKPVIYKYL
301: PLSQAAEGHS LMESSNHIGK ILLET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)