suba logo
AT4G21560.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : vacuolar protein sorting-associated protein 28 homolog 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
vacuolar protein sorting-associated protein 28 homolog 1 (VPS28-1); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated, VPS28, N-terminal (InterPro:IPR017898), Vacuolar protein sorting-associated, VPS28, C-terminal (InterPro:IPR017899), Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting-associated protein VPS28 family protein (TAIR:AT4G05000.2); Has 388 Blast hits to 387 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 146; Plants - 72; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
BioGrid:13530eggNOG:ENOG4111IQ4eggNOG:KOG3284EMBL:AL022603
EMBL:AL035527EMBL:AL161555EMBL:AY136475EMBL:BT006261
EMBL:CP002687EnsemblPlants:AT4G21560EnsemblPlants:AT4G21560.1EnsemblPlants:AT4G21560.2
EnsemblPlants:AT4G21560.3entrez:828241GeneID:828241Genevisible:O65421
GO:GO:0000813GO:GO:0005794GO:GO:0005802GO:GO:0032403
GO:GO:0043328Gramene:AT4G21560.1Gramene:AT4G21560.2Gramene:AT4G21560.3
hmmpanther:PTHR12937HOGENOM:HOG000203818InParanoid:O65421IntAct:O65421
InterPro:IPR007143InterPro:IPR017898InterPro:IPR017899KEGG:ath:AT4G21560
KO:K12184OMA:KYRLDCPPANTHER:PTHR12937PaxDb:O65421
Pfam:O65421Pfam:PF03997Pfscan:PS51310Pfscan:PS51313
PhylomeDB:O65421PIR:T05164PIRSF:PIRSF017535PRIDE:O65421
PRO:PR:O65421PROSITE:PS51310PROSITE:PS51313ProteinModelPortal:O65421
Proteomes:UP000006548RefSeq:NP_193887.1RefSeq:NP_849417.1RefSeq:NP_974585.1
SMR:O65421STRING:3702.AT4G21560.1SUPFAM:0053163SUPFAM:SSF140111
TAIR:AT4G21560tair10-symbols:VPS28-1UniGene:At.19732UniProt:O65421
Coordinates (TAIR10) chr4:-:11469037..11469666
Molecular Weight (calculated) 23495.10 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.20
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVKLWNDKR EREMYENFAE LYAIIKATEK LEKAYIRDLI SPSEYETECQ KLIVHFKTLS ASLKDMVPNI ERFAETYKMD CSAAVYRLVT SGVPATVEHR
101: AAASASTSSS ASVVAECVQN FITSMDSLKL NMVAVDQVYP LLSDLSASLN KLSILPPDFE GKIKMKEWLL RLSKMGASDE LTEQQARQLH FDLESSYNSF
201: MAALPNAGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)