suba logo
AT4G21490.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)H dehydrogenase B3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)H dehydrogenase B3 (NDB3); FUNCTIONS IN: NADH dehydrogenase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), EF-HAND 2 (InterPro:IPR018249), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: NAD(P)H dehydrogenase B2 (TAIR:AT4G05020.1); Has 16626 Blast hits to 16156 proteins in 2577 species: Archae - 456; Bacteria - 13275; Metazoa - 114; Fungi - 758; Plants - 505; Viruses - 0; Other Eukaryotes - 1518 (source: NCBI BLink).
Protein Annotations
EC:1.6.5.9eggNOG:COG1252eggNOG:KOG2495EMBL:AL022603EMBL:AL161555EMBL:CP002687EnsemblPlants:AT4G21490
EnsemblPlants:AT4G21490.1entrez:828234Gene3D:1.10.238.10Gene3D:3.50.50.60GeneID:828234Genevisible:F4JJJ3GO:GO:0005509
GO:GO:0005739GO:GO:0005743GO:GO:0005758GO:GO:0005777GO:GO:0016491GO:GO:0055114Gramene:AT4G21490.1
hmmpanther:PTHR22912InParanoid:F4JJJ3InterPro:IPR002048InterPro:IPR011992InterPro:IPR023753iPTMnet:F4JJJ3KEGG:ath:AT4G21490
KO:K17871OMA:LIVYSEAPaxDb:F4JJJ3Pfam:F4JJJ3Pfam:PF07992Pfscan:PS50222PIR:T05157
PRIDE:F4JJJ3PRO:PR:F4JJJ3PROSITE:PS50222ProteinModelPortal:F4JJJ3Proteomes:UP000006548RefSeq:NP_193880.5SMART:SM00054
SMR:F4JJJ3STRING:3702.AT4G21490.1SUPFAM:SSF47473SUPFAM:SSF51905TAIR:AT4G21490tair10-symbols:NDB3UniGene:At.32626
UniProt:F4JJJ3
Coordinates (TAIR10) chr4:-:11436495..11439326
Molecular Weight (calculated) 65168.10 Da
IEP (calculated) 8.50
GRAVY (calculated) -0.33
Length 580 amino acids
Sequence (TAIR10)
(BLAST)
001: MRPFAYFERL SQAFHDYPSL SKILVVSTIS GGGLIVYSEA NPSYSNNGVE TKTRKRKVVL LGTGWAGASF LKTLNNSSYE VQVISPRNYF AFTPLLPSVT
101: CGTVEARSVV EPIRNIARKQ NVEMSFLEAE CFKIDPGSKK VYCRSKQGVN SKGKKEFDVD YDYLVIATGA QSNTFNIPGV EENCHFLKEV EDAQRIRSTV
201: IDSFEKASLP GLNEQERKRM LHFVVVGGGP TGVEFASELH DFVNEDLVKL YPKAKNLVQI TLLEAADHIL TMFDKRITEF AEEKFTRDGI DVKLGSMVVK
301: VNDKEISAKT KAGEVSTIPY GMIVWSTGIG TRPVIKDFMK QIGQGNRRAL ATDEWLRVEG CDNIYALGDC ATINQRKVME DIAAIFKKAD KENSGTLTMK
401: EFHEVMSDIC DRYPQVELYL KSKGMHGITD LLKQAQAENG SNKSVELDIE ELKSALCQVD SQVKLLPATG QVAAQQGTYL AKCFDRMEVC EKNPEGPIRI
501: RGEGRHRFRP FRYRHLGQFA PLGGEQTAAQ LPGDWVSIGH SSQWLWYSVY ASKQVSWRTR VLVVSDWMRR FIFGRDSSRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)