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AT4G21450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): plasma membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PapD-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PapD-like superfamily protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535); BEST Arabidopsis thaliana protein match is: PapD-like superfamily protein (TAIR:AT4G05060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:11600EMBL:AL022603EMBL:AL161555EMBL:AY070416EMBL:AY087306EMBL:AY096741EMBL:CP002687
EnsemblPlants:AT4G21450EnsemblPlants:AT4G21450.1entrez:826300ExpressionAtlas:Q8VYN2Gene3D:2.60.40.360GeneID:826300Genevisible:Q8VYN2
GO:GO:0005789hmmpanther:PTHR10809hmmpanther:PTHR10809:SF48HOGENOM:HOG000242369InParanoid:Q8VYN2IntAct:Q8VYN2InterPro:IPR000535
InterPro:IPR008962InterPro:IPR016763iPTMnet:Q8VYN2PANTHER:PTHR10809Pfam:PF00635Pfam:Q8VYN2Pfscan:PS50202
PhylomeDB:Q8VYN2PIR:T05153PRIDE:Q8VYN2PRO:PR:Q8VYN2PROSITE:PS50202ProteinModelPortal:Q8VYN2Proteomes:UP000006548
RefSeq:NP_567627.1RefSeq:NP_974584.1SMR:Q8VYN2SUPFAM:SSF49354TAIR:AT4G21450UniGene:At.28664UniProt:Q8VYN2
Coordinates (TAIR10) chr4:+:11426136..11428125
Molecular Weight (calculated) 32965.90 Da
IEP (calculated) 10.01
GRAVY (calculated) -0.88
Length 295 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)