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AT4G21350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant U-box 8
Curator
Summary (TAIR10)
Encodes a U-box/ARM repeat protein required fore self-incompatibility.
Computational
Description (TAIR10)
plant U-box 8 (PUB8); FUNCTIONS IN: ubiquitin-protein ligase activity, binding, zinc ion binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 13 (TAIR:AT3G46510.1); Has 3561 Blast hits to 3109 proteins in 223 species: Archae - 0; Bacteria - 18; Metazoa - 344; Fungi - 298; Plants - 2564; Viruses - 3; Other Eukaryotes - 334 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2125-MONOMEREC:6.3.2.-eggNOG:ENOG410XRTNeggNOG:KOG0167EMBL:AL031187EMBL:AL161554EMBL:CP002687
EMBL:EF182720EMBL:EF637083EnsemblPlants:AT4G21350EnsemblPlants:AT4G21350.1entrez:827885Gene3D:1.25.10.10Gene3D:3.30.40.10
GeneID:827885Genevisible:O81902GO:GO:0004842GO:GO:0008270GO:GO:0016567GO:GO:0016874Gramene:AT4G21350.1
hmmpanther:PTHR23315hmmpanther:PTHR23315:SF112HOGENOM:HOG000272744InParanoid:O81902InterPro:IPR000225InterPro:IPR003613InterPro:IPR011989
InterPro:IPR013083InterPro:IPR016024KEGG:ath:AT4G21350OMA:AKCREGRPaxDb:O81902Pfam:O81902Pfam:PF04564
Pfscan:PS51698PhylomeDB:O81902PIR:T05177PRIDE:O81902PRO:PR:O81902PROSITE:PS51698ProteinModelPortal:O81902
Proteomes:UP000006548RefSeq:NP_193866.1SMART:SM00185SMART:SM00504SMR:O81902STRING:3702.AT4G21350.1SUPFAM:SSF48371
SUPFAM:SSF57850TAIR:AT4G21350tair10-symbols:B80tair10-symbols:PUB8UniGene:At.65012UniPathway:UPA00143UniProt:O81902
Coordinates (TAIR10) chr4:-:11356143..11357267
Molecular Weight (calculated) 40877.50 Da
IEP (calculated) 7.30
GRAVY (calculated) 0.04
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFDLPNDFR CPISLEIMSD PVILQSGHTF DRVSIQQWID SGNRTCPITK LPLSETPYLI PNHALRSLIL NFAHVSLKES SRPRTQQEHS HSQSQALIST
101: LVSQSSSNAS KLESLTRLVR LTKRDSSIRR KVTESGAVRA ALDCVDSCNQ VLQEKSLSLL LNLSLEDDNK VGLVADGVIR RIVTVLRVGS PDCKAIAATL
201: LTSLAVVEVN KATIGSYPDA ISALVSLLRV GNDRERKESA TALYALCSFP DNRKRVVDCG SVPILVEAAD SGLERAVEVL GLLVKCRGGR EEMSKVSGFV
301: EVLVNVLRNG NLKGIQYSLF ILNCLCCCSG EIVDEVKREG VVEICFGFED NESEKIRRNA TILVHTLLGI PMSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)