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AT4G21310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1218)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT2G32280.1); Has 141 Blast hits to 141 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXN5eggNOG:ENOG410YM9KEMBL:AL031187EMBL:AL161554
EMBL:BT014771EMBL:BT015009EMBL:CP002687EnsemblPlants:AT4G21310
EnsemblPlants:AT4G21310.1entrez:827879GeneID:827879GO:GO:0016021
Gramene:AT4G21310.1hmmpanther:PTHR31769hmmpanther:PTHR31769:SF14HOGENOM:HOG000236378
InterPro:IPR009606KEGG:ath:AT4G21310OMA:MEFIRASPfam:PF06749
PhylomeDB:O81898PIR:T05173Proteomes:UP000006548RefSeq:NP_193862.1
TAIR:AT4G21310TMHMM:TMhelixUniGene:At.32644UniProt:O81898
Coordinates (TAIR10) chr4:-:11339134..11339787
Molecular Weight (calculated) 18142.50 Da
IEP (calculated) 8.91
GRAVY (calculated) 0.68
Length 168 amino acids
Sequence (TAIR10)
(BLAST)
001: MARNVGFFIC ILILAMDVSA GILGIEAEIA QNKVKHLKMW IFECRDPSYT AFKYGLAACI LLVLAHVTAN FLGGCLCVAS RQDLEKSSAN KQLAVASLIF
101: TWIILAIAFS MLIVGTMANS RSRKNCGISH HRVLSIGGIL CFVHGLFAVA YYISATASTR EQTSAGHA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)